Wall clock time and date at job start Mon Mar 30 2020 20:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 119.61883 * 2 1 4 4 C 1.38635 * 119.15971 * 180.02562 * 3 2 1 5 5 C 1.38669 * 118.42241 * 359.74363 * 4 3 2 6 6 C 1.38187 * 119.15931 * 0.49491 * 5 4 3 7 7 C 1.50701 * 119.61492 * 179.77133 * 6 5 4 8 8 H 1.09002 * 109.47060 * 154.72904 * 7 6 5 9 9 C 1.52997 * 109.47212 * 34.72849 * 7 6 5 10 10 C 1.50699 * 109.47269 * 274.72757 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47256 * 90.00491 * 14 12 10 16 16 H 1.48506 * 109.46930 * 210.00332 * 14 12 10 17 17 H 1.48499 * 109.47104 * 330.00193 * 14 12 10 18 18 N 1.31864 * 119.61606 * 180.02562 * 2 1 3 19 19 H 1.09004 * 109.47251 * 269.98071 * 1 2 3 20 20 H 1.08997 * 109.47202 * 29.98164 * 1 2 3 21 21 H 1.08996 * 109.47062 * 149.97968 * 1 2 3 22 22 H 1.08003 * 120.42350 * 0.03784 * 3 2 1 23 23 H 1.08001 * 120.78866 * 179.97438 * 4 3 2 24 24 H 1.08003 * 120.42014 * 180.24801 * 5 4 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 9 7 6 26 26 H 1.08998 * 109.47533 * 59.99628 * 9 7 6 27 27 H 1.08996 * 109.47853 * 179.97438 * 9 7 6 28 28 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 0.0044 6 6 3.4766 -1.1949 -0.0008 7 6 4.1726 -2.5315 -0.0007 8 1 3.5145 -3.2838 0.4340 9 6 5.4565 -2.4379 0.8262 10 6 4.5140 -2.9202 -1.4161 11 1 4.2534 -2.2647 -2.2339 12 6 5.1600 -4.1122 -1.6670 13 7 5.4778 -4.9102 -0.6711 14 14 5.5837 -4.5936 -3.4214 15 1 6.9329 -4.0767 -3.7645 16 1 5.5746 -6.0735 -3.5445 17 1 4.5805 -4.0135 -4.3500 18 7 2.1587 -1.1464 -0.0005 19 1 -0.3634 -0.0003 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5141 22 1 1.6508 2.1373 0.0006 23 1 4.1367 2.1138 -0.0010 24 1 5.3057 -0.0806 0.0082 25 1 6.1146 -1.6855 0.3915 26 1 5.2097 -2.1567 1.8499 27 1 5.9598 -3.4047 0.8267 28 1 5.9319 -5.7489 -0.8476 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622709.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:32 Heat of formation + Delta-G solvation = -0.069091 kcal Electronic energy + Delta-G solvation = -11450.354283 eV Core-core repulsion = 9464.936327 eV Total energy + Delta-G solvation = -1985.417956 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.07404 -36.58720 -33.96662 -33.35438 -31.43201 -27.98241 -27.25664 -24.87786 -23.06811 -21.43216 -18.38267 -17.43579 -17.09849 -16.60902 -15.55190 -15.35288 -14.65472 -14.46902 -13.81165 -13.47208 -13.26458 -13.05543 -12.84320 -12.82313 -12.58086 -12.27196 -12.02581 -11.65465 -11.17787 -10.57344 -10.54218 -10.05884 -9.48275 -8.13499 -6.28711 0.38668 0.56571 1.39691 1.40730 1.51539 2.40417 3.04358 3.12916 3.55303 4.00089 4.13543 4.34639 4.45585 4.72470 4.77266 4.83293 4.87477 4.90044 5.12212 5.13677 5.28489 5.35415 5.43352 5.56580 5.84868 5.96966 6.07129 6.26553 6.76765 7.36515 7.41418 8.91516 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.046768 B = 0.010598 C = 0.010030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.556070 B = 2641.400626 C = 2791.001785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 C -0.192 4.192 4 C -0.071 4.071 5 C -0.194 4.194 6 C 0.146 3.854 7 C 0.081 3.919 8 H 0.001 0.999 9 C -0.121 4.121 10 C -0.521 4.521 11 H 0.041 0.959 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.276 1.276 18 N -0.531 5.531 19 H 0.087 0.913 20 H 0.102 0.898 21 H 0.059 0.941 22 H 0.169 0.831 23 H 0.167 0.833 24 H 0.135 0.865 25 H 0.044 0.956 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 11.850 0.896 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.211 4.211 4 C -0.097 4.097 5 C -0.214 4.214 6 C 0.009 3.991 7 C 0.062 3.938 8 H 0.019 0.981 9 C -0.180 4.180 10 C -0.560 4.560 11 H 0.060 0.940 12 C -0.183 4.183 13 N -0.554 5.554 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.201 1.201 18 N -0.242 5.242 19 H 0.105 0.895 20 H 0.121 0.879 21 H 0.078 0.922 22 H 0.186 0.814 23 H 0.185 0.815 24 H 0.153 0.847 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.860 10.903 0.939 11.974 hybrid contribution 0.820 -0.073 -0.753 1.115 sum -4.041 10.830 0.186 11.560 Atomic orbital electron populations 1.20747 0.86976 1.03842 1.03693 1.22046 0.98651 0.88626 0.94560 1.22206 0.94997 0.99530 1.04410 1.21956 0.95028 0.98137 0.94536 1.22109 1.01907 0.93174 1.04207 1.21828 0.89123 0.97163 0.90943 1.17654 0.92500 0.87738 0.95880 0.98092 1.21671 0.98346 1.02033 0.95908 1.21121 1.38211 1.04770 0.91881 0.94023 1.25717 0.95351 0.95914 1.01270 1.70006 1.41274 1.11683 1.32395 0.85521 0.78751 0.77445 0.79727 1.19280 1.20390 1.20056 1.67386 1.10585 1.31287 1.14975 0.89470 0.87919 0.92152 0.81376 0.81514 0.84726 0.93672 0.95585 0.91739 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 10.17 71.24 0.72 -1.72 15 2 C 0.10 3.50 6.78 42.55 0.29 3.79 15 3 C -0.19 -5.51 9.74 22.36 0.22 -5.29 15 4 C -0.07 -2.15 10.18 22.47 0.23 -1.92 15 5 C -0.19 -7.69 9.18 22.36 0.21 -7.48 15 6 C 0.15 7.00 5.73 42.54 0.24 7.24 15 7 C 0.08 4.48 2.62 -12.29 -0.03 4.44 15 8 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 9 C -0.12 -6.06 8.39 71.98 0.60 -5.46 15 10 C -0.52 -30.45 8.55 25.60 0.22 -30.24 15 11 H 0.04 2.46 7.74 -2.91 -0.02 2.44 15 12 C 0.02 0.94 5.30 84.65 0.45 1.39 15 13 N -0.91 -53.87 11.32 21.45 0.24 -53.62 15 14 Si 0.96 44.77 29.54 68.60 2.03 46.80 15 15 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 18 N -0.53 -24.60 10.19 -172.07 -1.75 -26.35 15 19 H 0.09 1.94 8.14 -2.38 -0.02 1.92 15 20 H 0.10 1.87 8.08 -2.39 -0.02 1.85 15 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.17 3.21 8.06 -2.91 -0.02 3.19 15 23 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 24 H 0.13 5.11 6.30 -2.91 -0.02 5.09 15 25 H 0.04 2.07 6.49 -2.39 -0.02 2.05 15 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 27 H 0.06 3.52 6.07 -2.39 -0.01 3.51 15 28 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -68.06 240.66 4.80 -63.26 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.14 Total: 5.16 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.15 Total: -35.25 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.51 Total: -79.97 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.06 4.80 -63.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622709.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.194 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds