Wall clock time and date at job start Mon Mar 30 2020 20:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34518 * 125.78946 * 2 1 4 4 C 1.41386 * 106.83652 * 179.75493 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.37309 * 4 3 2 6 6 C 1.50697 * 125.79093 * 179.89203 * 5 4 3 7 7 C 1.50702 * 115.54745 * 296.37228 * 6 5 4 8 8 H 1.08001 * 119.99725 * 99.44020 * 7 6 5 9 9 C 1.37871 * 119.99792 * 279.43144 * 7 6 5 10 10 N 1.31517 * 120.00009 * 5.77979 * 9 7 6 11 11 Si 1.86797 * 119.99874 * 186.04730 * 9 7 6 12 12 H 1.48501 * 109.47470 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47174 * 120.00762 * 11 9 7 14 14 H 1.48501 * 109.47245 * 240.00449 * 11 9 7 15 15 C 1.53008 * 117.51655 * 82.06880 * 6 5 4 16 16 C 1.53002 * 117.50032 * 150.69680 * 6 5 4 17 17 O 1.34302 * 108.42020 * 359.62715 * 5 4 3 18 18 H 1.08998 * 109.46508 * 270.02110 * 1 2 3 19 19 H 1.09003 * 109.46670 * 30.02049 * 1 2 3 20 20 H 1.08999 * 109.47188 * 150.02003 * 1 2 3 21 21 H 1.07990 * 126.58189 * 359.96269 * 3 2 1 22 22 H 1.08003 * 126.57268 * 180.24209 * 4 3 2 23 23 H 0.96996 * 119.99754 * 185.02373 * 10 9 7 24 24 H 1.08998 * 117.49624 * 214.97418 * 15 6 5 25 25 H 1.08993 * 117.49812 * 359.97438 * 15 6 5 26 26 H 1.08997 * 117.49865 * 359.97438 * 16 6 5 27 27 H 1.09003 * 117.49331 * 144.99510 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 0.0058 5 6 3.5814 -0.7122 0.0006 6 6 4.7706 -1.6379 0.0015 7 6 5.6589 -1.5560 -1.2130 8 1 6.5744 -0.9844 -1.1749 9 6 5.3029 -2.2111 -2.3728 10 7 4.1362 -2.8121 -2.4570 11 14 6.4809 -2.2511 -3.8220 12 1 7.7205 -1.5116 -3.4730 13 1 6.8201 -3.6603 -4.1454 14 1 5.8388 -1.6139 -4.9997 15 6 5.4384 -1.9294 1.3470 16 6 4.5986 -3.0083 0.6600 17 8 2.2925 -1.0894 0.0003 18 1 -0.3632 0.0004 1.0277 19 1 -0.3633 0.8899 -0.5142 20 1 -0.3633 -0.8901 -0.5135 21 1 1.9667 2.1204 -0.0006 22 1 4.5213 1.2433 0.0110 23 1 3.9152 -3.3340 -3.2442 24 1 6.5203 -2.0620 1.3535 25 1 5.0180 -1.4513 2.2316 26 1 3.6255 -3.2401 1.0929 27 1 5.1280 -3.8506 0.2146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260737988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:36 Heat of formation + Delta-G solvation = 30.472535 kcal Electronic energy + Delta-G solvation = -11786.291800 eV Core-core repulsion = 9704.479566 eV Total energy + Delta-G solvation = -2081.812234 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.44654 -36.26282 -32.16904 -32.02473 -30.78729 -26.25384 -25.14866 -21.41750 -20.85018 -20.23065 -18.85992 -16.70844 -15.18764 -15.09610 -14.55175 -13.92254 -13.26669 -12.65975 -12.56323 -12.35721 -11.75705 -11.55969 -11.19386 -11.05874 -11.00476 -10.54277 -10.30557 -9.79893 -9.27471 -8.80607 -8.62219 -8.34149 -7.10192 -6.10240 -4.21823 2.81003 3.25264 3.33727 3.37353 3.69138 3.93853 4.36196 5.19523 5.29844 5.53295 5.74732 5.85848 5.91160 6.07914 6.13957 6.33513 6.41755 6.62119 6.66271 6.89660 7.03256 7.10330 7.32913 7.45603 7.64270 7.80165 8.20184 8.42745 8.81263 9.45240 10.96466 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.013346 C = 0.011893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.467114 B = 2097.495140 C = 2353.782363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.063 4.063 3 C -0.210 4.210 4 C -0.248 4.248 5 C 0.098 3.902 6 C 0.098 3.902 7 C -0.493 4.493 8 H 0.068 0.932 9 C 0.072 3.928 10 N -0.863 5.863 11 Si 0.896 3.104 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.283 1.283 15 C -0.188 4.188 16 C -0.157 4.157 17 O -0.166 6.166 18 H 0.067 0.933 19 H 0.076 0.924 20 H 0.068 0.932 21 H 0.131 0.869 22 H 0.135 0.865 23 H 0.262 0.738 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 3.282 3.938 6.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C -0.229 4.229 4 C -0.267 4.267 5 C 0.047 3.953 6 C 0.097 3.903 7 C -0.530 4.530 8 H 0.086 0.914 9 C -0.133 4.133 10 N -0.498 5.498 11 Si 0.722 3.278 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.209 1.209 15 C -0.225 4.225 16 C -0.195 4.195 17 O -0.062 6.062 18 H 0.086 0.914 19 H 0.095 0.905 20 H 0.087 0.913 21 H 0.149 0.851 22 H 0.153 0.847 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.625 2.921 3.784 6.000 hybrid contribution 0.524 0.212 -0.977 1.129 sum -3.101 3.133 2.807 5.226 Atomic orbital electron populations 1.20078 0.86664 1.02979 1.02096 1.22092 0.93518 0.85259 1.10391 1.21338 0.93411 0.98134 1.10063 1.21203 0.96831 0.94358 1.14304 1.22795 0.81466 0.94315 0.96764 1.17135 0.88971 0.92168 0.92002 1.20404 1.05151 1.33173 0.94299 0.91358 1.25080 0.94755 0.95238 0.98248 1.70077 1.19534 1.30939 1.29202 0.86477 0.81102 0.77934 0.82244 1.19418 1.20710 1.20887 1.23015 0.98632 1.05330 0.95541 1.22631 0.98906 0.94262 1.03681 1.84039 1.17145 1.34266 1.70798 0.91398 0.90548 0.91265 0.85113 0.84750 0.92807 0.89333 0.91167 0.91283 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.42 36.01 0.38 -0.56 15 2 C -0.06 -1.32 7.32 -35.62 -0.26 -1.58 15 3 C -0.21 -4.36 10.81 -39.70 -0.43 -4.79 15 4 C -0.25 -5.81 10.80 -39.70 -0.43 -6.24 15 5 C 0.10 2.51 6.33 -35.63 -0.23 2.29 15 6 C 0.10 2.53 1.71 -156.81 -0.27 2.26 15 7 C -0.49 -13.63 8.79 -34.44 -0.30 -13.93 15 8 H 0.07 1.85 7.82 -52.49 -0.41 1.44 15 9 C 0.07 2.01 5.42 -17.82 -0.10 1.91 15 10 N -0.86 -25.03 13.11 55.43 0.73 -24.31 15 11 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 15 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 C -0.19 -4.14 9.94 -26.73 -0.27 -4.41 15 16 C -0.16 -3.78 9.67 -26.73 -0.26 -4.04 15 17 O -0.17 -4.19 10.62 5.71 0.06 -4.13 15 18 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.13 2.25 8.06 -52.49 -0.42 1.83 15 22 H 0.13 2.96 8.06 -52.48 -0.42 2.53 15 23 H 0.26 7.20 8.32 -40.82 -0.34 6.86 15 24 H 0.09 1.83 8.14 -51.93 -0.42 1.41 15 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.07 1.62 8.14 -51.93 -0.42 1.19 15 27 H 0.09 2.12 8.14 -51.93 -0.42 1.70 15 LS Contribution 245.04 15.07 3.69 3.69 Total: -1.00 -30.36 245.04 -6.05 -36.41 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.35 Total: 1.36 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.16 Total: -29.10 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.73 Total: -24.31 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.06 Total: -4.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.36 -6.05 -36.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.887 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds