Wall clock time and date at job start Mon Mar 30 2020 20:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34518 * 125.78946 * 2 1 4 4 C 1.41386 * 106.83652 * 179.75493 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.37309 * 4 3 2 6 6 C 1.50697 * 125.79093 * 179.89203 * 5 4 3 7 7 C 1.50702 * 115.54745 * 296.37228 * 6 5 4 8 8 H 1.08001 * 119.99725 * 99.44020 * 7 6 5 9 9 C 1.37871 * 119.99792 * 279.43144 * 7 6 5 10 10 N 1.31517 * 120.00009 * 5.77979 * 9 7 6 11 11 Si 1.86797 * 119.99874 * 186.04730 * 9 7 6 12 12 H 1.48501 * 109.47470 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47174 * 120.00762 * 11 9 7 14 14 H 1.48501 * 109.47245 * 240.00449 * 11 9 7 15 15 C 1.53008 * 117.51655 * 82.06880 * 6 5 4 16 16 C 1.53002 * 117.50032 * 150.69680 * 6 5 4 17 17 O 1.34302 * 108.42020 * 359.62715 * 5 4 3 18 18 H 1.08998 * 109.46508 * 270.02110 * 1 2 3 19 19 H 1.09003 * 109.46670 * 30.02049 * 1 2 3 20 20 H 1.08999 * 109.47188 * 150.02003 * 1 2 3 21 21 H 1.07990 * 126.58189 * 359.96269 * 3 2 1 22 22 H 1.08003 * 126.57268 * 180.24209 * 4 3 2 23 23 H 0.96996 * 119.99754 * 185.02373 * 10 9 7 24 24 H 1.08998 * 117.49624 * 214.97418 * 15 6 5 25 25 H 1.08993 * 117.49812 * 359.97438 * 15 6 5 26 26 H 1.08997 * 117.49865 * 359.97438 * 16 6 5 27 27 H 1.09003 * 117.49331 * 144.99510 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 0.0058 5 6 3.5814 -0.7122 0.0006 6 6 4.7706 -1.6379 0.0015 7 6 5.6589 -1.5560 -1.2130 8 1 6.5744 -0.9844 -1.1749 9 6 5.3029 -2.2111 -2.3728 10 7 4.1362 -2.8121 -2.4570 11 14 6.4809 -2.2511 -3.8220 12 1 7.7205 -1.5116 -3.4730 13 1 6.8201 -3.6603 -4.1454 14 1 5.8388 -1.6139 -4.9997 15 6 5.4384 -1.9294 1.3470 16 6 4.5986 -3.0083 0.6600 17 8 2.2925 -1.0894 0.0003 18 1 -0.3632 0.0004 1.0277 19 1 -0.3633 0.8899 -0.5142 20 1 -0.3633 -0.8901 -0.5135 21 1 1.9667 2.1204 -0.0006 22 1 4.5213 1.2433 0.0110 23 1 3.9152 -3.3340 -3.2442 24 1 6.5203 -2.0620 1.3535 25 1 5.0180 -1.4513 2.2316 26 1 3.6255 -3.2401 1.0929 27 1 5.1280 -3.8506 0.2146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260737988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:35 Heat of formation + Delta-G solvation = 13.267702 kcal Electronic energy + Delta-G solvation = -11787.037857 eV Core-core repulsion = 9704.479566 eV Total energy + Delta-G solvation = -2082.558291 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.19359 -38.13829 -34.12249 -33.81113 -32.31333 -28.08894 -26.94873 -23.22752 -22.67131 -21.97484 -20.66018 -18.66705 -17.05221 -16.85695 -16.46404 -15.66886 -15.05867 -14.30352 -13.92807 -13.66656 -13.47785 -13.36777 -13.18346 -12.89129 -12.60411 -12.36503 -12.14861 -11.70269 -11.19579 -10.66069 -10.52867 -10.25451 -8.84239 -8.16557 -6.35506 1.11053 1.39808 1.41460 1.53536 1.94296 2.26332 2.42638 3.14686 3.44236 4.00148 4.21044 4.37243 4.49465 4.52208 4.68811 4.76228 4.86824 4.87768 4.96351 5.13406 5.20232 5.40481 5.51196 5.62291 5.74735 5.95083 6.20440 6.65097 6.72476 7.35027 8.89465 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.013346 C = 0.011893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.467114 B = 2097.495140 C = 2353.782363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.066 4.066 3 C -0.216 4.216 4 C -0.255 4.255 5 C 0.058 3.942 6 C 0.065 3.935 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.024 3.976 10 N -0.899 5.899 11 Si 0.961 3.039 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.284 1.284 15 C -0.159 4.159 16 C -0.162 4.162 17 O -0.197 6.197 18 H 0.094 0.906 19 H 0.106 0.894 20 H 0.068 0.932 21 H 0.169 0.831 22 H 0.141 0.859 23 H 0.262 0.738 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 4.394 4.101 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.235 4.235 4 C -0.274 4.274 5 C 0.008 3.992 6 C 0.064 3.936 7 C -0.546 4.546 8 H 0.084 0.916 9 C -0.178 4.178 10 N -0.535 5.535 11 Si 0.785 3.215 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.210 1.210 15 C -0.196 4.196 16 C -0.199 4.199 17 O -0.094 6.094 18 H 0.113 0.887 19 H 0.125 0.875 20 H 0.087 0.913 21 H 0.186 0.814 22 H 0.158 0.842 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.962 4.042 3.962 6.909 hybrid contribution 0.564 -0.082 -0.972 1.126 sum -3.398 3.960 2.990 6.014 Atomic orbital electron populations 1.20344 0.82606 1.04423 1.04270 1.23250 0.95832 0.84341 1.08141 1.21730 0.92014 0.99970 1.09809 1.21512 0.98527 0.93921 1.13419 1.22762 0.81781 0.95033 0.99643 1.17279 0.90024 0.93167 0.93098 1.20714 1.05475 1.33020 0.95414 0.91634 1.25867 0.96214 0.94923 1.00822 1.70202 1.21251 1.32067 1.29973 0.85467 0.79219 0.78165 0.78632 1.18458 1.20010 1.21048 1.23056 0.99106 1.02837 0.94604 1.22504 0.99294 0.93734 1.04379 1.84002 1.17511 1.36338 1.71563 0.88738 0.87540 0.91331 0.81390 0.84158 0.92941 0.88001 0.89242 0.91413 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.42 71.24 0.74 -0.90 15 2 C -0.07 -2.68 7.32 24.83 0.18 -2.50 15 3 C -0.22 -8.53 10.81 22.19 0.24 -8.29 15 4 C -0.25 -11.78 10.80 22.19 0.24 -11.54 15 5 C 0.06 3.01 6.33 24.83 0.16 3.17 15 6 C 0.06 3.38 1.71 -53.67 -0.09 3.29 15 7 C -0.51 -28.38 8.79 25.60 0.23 -28.15 15 8 H 0.07 3.56 7.82 -2.91 -0.02 3.54 15 9 C 0.02 1.32 5.42 84.65 0.46 1.78 15 10 N -0.90 -53.11 13.11 21.45 0.28 -52.83 15 11 Si 0.96 43.56 29.54 68.60 2.03 45.58 15 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 15 C -0.16 -6.90 9.94 30.60 0.30 -6.60 15 16 C -0.16 -7.88 9.67 30.60 0.30 -7.59 15 17 O -0.20 -9.94 10.62 -2.49 -0.03 -9.96 15 18 H 0.09 2.10 8.14 -2.39 -0.02 2.09 15 19 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.17 5.18 8.06 -2.92 -0.02 5.15 15 22 H 0.14 6.11 8.06 -2.91 -0.02 6.08 15 23 H 0.26 14.65 8.32 -92.71 -0.77 13.87 15 24 H 0.10 4.08 8.14 -2.39 -0.02 4.06 15 25 H 0.09 3.50 8.14 -2.39 -0.02 3.48 15 26 H 0.07 3.24 8.14 -2.39 -0.02 3.22 15 27 H 0.07 3.69 8.14 -2.39 -0.02 3.67 15 Total: -1.00 -65.52 245.04 6.18 -59.34 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.14 Total: 15.20 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 2.75 Total: -57.34 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.28 Total: -52.83 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.03 Total: -9.96 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.52 6.18 -59.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.611 kcal (2) G-P(sol) polarization free energy of solvation -65.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds