Wall clock time and date at job start Mon Mar 30 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.50706 * 109.46929 * 239.99947 * 2 1 3 5 5 H 1.07995 * 119.99909 * 239.99569 * 4 2 1 6 6 C 1.37879 * 119.99777 * 60.00433 * 4 2 1 7 7 N 1.31508 * 119.99849 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99589 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47182 * 59.99725 * 8 6 4 10 10 H 1.48505 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47574 * 299.99409 * 8 6 4 12 12 C 1.50706 * 109.47413 * 120.00057 * 2 1 3 13 13 C 1.38227 * 119.61686 * 285.02767 * 12 2 1 14 14 C 1.38627 * 119.15663 * 179.70253 * 13 12 2 15 15 C 1.38669 * 118.42388 * 0.51169 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.50231 * 15 14 13 17 17 N 1.31856 * 119.61480 * 104.99684 * 12 2 1 18 18 H 1.08992 * 109.47284 * 299.99609 * 1 2 3 19 19 H 1.08998 * 109.47466 * 59.99986 * 1 2 3 20 20 H 1.09010 * 109.46811 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47670 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.46868 * 300.00380 * 3 2 1 23 23 H 1.09001 * 109.46819 * 59.99917 * 3 2 1 24 24 H 0.97006 * 119.99633 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.41947 * 359.94797 * 13 12 2 26 26 H 1.08008 * 120.78691 * 180.26734 * 14 13 12 27 27 H 1.08002 * 120.42244 * 179.78749 * 15 14 13 28 28 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4198 -5.2205 11 1 3.8074 -1.1190 -4.0079 12 6 2.0324 -0.7104 1.2305 13 6 1.9664 -0.0793 2.4585 14 6 2.4255 -0.7440 3.5850 15 6 2.9461 -2.0202 3.4321 16 6 2.9801 -2.5870 2.1723 17 7 2.5293 -1.9271 1.1232 18 1 -0.3633 0.5137 0.8899 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0278 -0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6767 1.9563 0.8900 24 1 0.7082 1.1609 -3.4844 25 1 1.5586 0.9174 2.5398 26 1 2.3825 -0.2774 4.5582 27 1 3.3161 -2.5660 4.2875 28 1 3.3802 -3.5821 2.0454 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260836383.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:39 Heat of formation + Delta-G solvation = 13.719010 kcal Electronic energy + Delta-G solvation = -11779.107439 eV Core-core repulsion = 9794.287380 eV Total energy + Delta-G solvation = -1984.820059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.99824 -37.17831 -33.50236 -33.15604 -30.55570 -27.60321 -27.19635 -24.39373 -23.95684 -20.95907 -18.15044 -17.56691 -16.70665 -16.47797 -15.77922 -14.91454 -14.79508 -14.41687 -13.81207 -13.47522 -13.35598 -12.91496 -12.62012 -12.51785 -12.35931 -12.09073 -11.68818 -11.43992 -10.77760 -10.59924 -10.34094 -9.83762 -9.59284 -7.94686 -6.05196 0.44354 0.63761 1.43775 1.44602 1.52440 2.50650 3.13986 3.30240 3.76507 4.15993 4.17339 4.41164 4.50998 4.77999 4.83698 4.93737 4.97900 5.10086 5.19974 5.34334 5.41910 5.46758 5.62112 5.75747 6.07408 6.10323 6.21015 6.54675 7.00124 7.48457 7.64105 9.05471 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.050263 B = 0.012864 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.940528 B = 2176.058697 C = 2534.571071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.091 3.909 3 C -0.116 4.116 4 C -0.502 4.502 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.911 5.911 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.279 1.279 12 C 0.141 3.859 13 C -0.192 4.192 14 C -0.077 4.077 15 C -0.188 4.188 16 C 0.072 3.928 17 N -0.511 5.511 18 H 0.033 0.967 19 H 0.069 0.931 20 H 0.012 0.988 21 H 0.016 0.984 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.257 0.743 25 H 0.138 0.862 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -2.041 10.773 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 C -0.174 4.174 4 C -0.540 4.540 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.205 1.205 12 C 0.004 3.996 13 C -0.212 4.212 14 C -0.102 4.102 15 C -0.208 4.208 16 C -0.085 4.085 17 N -0.220 5.220 18 H 0.052 0.948 19 H 0.087 0.913 20 H 0.031 0.969 21 H 0.035 0.965 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.183 0.817 27 H 0.184 0.816 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.149 -2.329 9.801 10.301 hybrid contribution 0.213 -0.067 -0.381 0.442 sum 2.362 -2.396 9.420 10.003 Atomic orbital electron populations 1.21617 0.96605 0.98266 1.00576 1.17271 0.92613 0.92090 0.89063 1.21689 0.97722 0.97200 1.00831 1.21407 1.30274 1.11644 0.90700 0.92591 1.25533 0.95763 0.95884 1.01016 1.69902 1.38108 1.23841 1.23308 0.85822 0.78462 0.78729 0.79752 1.20590 1.20793 1.20498 1.21893 0.91796 0.90161 0.95703 1.22182 1.03431 1.02204 0.93369 1.21931 0.94531 0.94583 0.99204 1.22388 1.02432 0.96866 0.99095 1.23332 0.95958 1.00303 0.88948 1.67588 1.10350 1.09527 1.34491 0.94757 0.91252 0.96890 0.96478 0.91428 0.94098 0.93315 0.84429 0.81680 0.81630 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 8.18 71.98 0.59 -4.96 15 2 C 0.09 4.59 0.60 -53.67 -0.03 4.56 15 3 C -0.12 -5.59 7.86 71.98 0.57 -5.03 15 4 C -0.50 -28.66 7.78 25.60 0.20 -28.46 15 5 H 0.06 3.34 6.68 -2.91 -0.02 3.32 15 6 C 0.02 0.87 5.15 84.66 0.44 1.31 15 7 N -0.91 -51.56 9.35 21.45 0.20 -51.36 15 8 Si 0.95 45.57 29.54 68.60 2.03 47.59 15 9 H -0.28 -13.47 7.11 99.48 0.71 -12.76 15 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 12 C 0.14 6.39 5.55 42.55 0.24 6.63 15 13 C -0.19 -6.92 9.08 22.36 0.20 -6.71 15 14 C -0.08 -2.14 10.18 22.47 0.23 -1.91 15 15 C -0.19 -5.07 10.11 22.36 0.23 -4.85 15 16 C 0.07 2.45 11.18 84.67 0.95 3.40 15 17 N -0.51 -23.14 8.59 -183.88 -1.58 -24.72 15 18 H 0.03 1.46 8.09 -2.39 -0.02 1.44 15 19 H 0.07 3.71 6.07 -2.39 -0.01 3.70 15 20 H 0.01 0.61 8.14 -2.38 -0.02 0.59 15 21 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.07 3.56 6.07 -2.39 -0.01 3.54 15 23 H 0.04 1.67 6.70 -2.39 -0.02 1.65 15 24 H 0.26 14.03 8.31 -92.70 -0.77 13.25 15 25 H 0.14 4.52 6.73 -2.91 -0.02 4.50 15 26 H 0.17 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.17 2.96 8.06 -2.91 -0.02 2.93 15 28 H 0.17 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -64.36 233.59 5.38 -58.98 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.14 Total: 5.53 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.60 Total: -36.02 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.38 Total: -76.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -64.36 5.38 -58.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836383.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.696 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds