Wall clock time and date at job start Mon Mar 30 2020 20:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99614 * 2 1 4 4 H 1.48503 * 109.47162 * 94.99417 * 3 2 1 5 5 H 1.48506 * 109.47406 * 214.99205 * 3 2 1 6 6 H 1.48500 * 109.47387 * 334.99447 * 3 2 1 7 7 C 1.37875 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99781 * 353.66859 * 7 2 1 9 9 C 1.50698 * 120.00066 * 173.66180 * 7 2 1 10 10 C 1.50699 * 112.85327 * 286.81014 * 9 7 2 11 11 C 1.34508 * 125.78785 * 305.08375 * 10 9 7 12 12 C 1.41392 * 106.83784 * 179.89087 * 11 10 9 13 13 C 1.34510 * 106.83867 * 0.36950 * 12 11 10 14 14 O 1.34300 * 108.42568 * 359.77232 * 13 12 11 15 15 C 1.53785 * 113.61372 * 155.49789 * 9 7 2 16 16 C 1.53779 * 87.08093 * 220.02385 * 15 9 7 17 17 C 1.53773 * 87.08495 * 25.43640 * 16 15 9 18 18 H 0.96996 * 120.00475 * 0.02562 * 1 2 3 19 19 H 1.07993 * 126.58543 * 0.02562 * 11 10 9 20 20 H 1.08004 * 126.57592 * 180.12477 * 12 11 10 21 21 H 1.08005 * 125.78495 * 179.79835 * 13 12 11 22 22 H 1.08991 * 113.61645 * 334.57512 * 15 9 7 23 23 H 1.09006 * 113.60695 * 105.47429 * 15 9 7 24 24 H 1.09005 * 113.61564 * 270.88324 * 16 15 9 25 25 H 1.08997 * 113.61120 * 139.98646 * 16 15 9 26 26 H 1.08995 * 113.61516 * 220.02318 * 17 16 15 27 27 H 1.08997 * 113.61589 * 89.10949 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6021 1.9855 1.3948 5 1 3.4899 1.4731 -0.8029 6 1 1.3976 2.6808 -0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 1.4695 -2.1265 0.1022 9 6 3.5047 -1.1979 -0.1446 10 6 3.9591 -0.8711 -1.5438 11 6 3.5761 -1.5091 -2.6643 12 6 4.2384 -0.8773 -3.7420 13 6 4.9927 0.1036 -3.2147 14 8 4.8196 0.1028 -1.8829 15 6 4.1772 -2.4477 0.4475 16 6 5.2806 -1.5113 0.9675 17 6 4.2301 -0.3885 0.9435 18 1 -0.4850 0.8400 -0.0004 19 1 2.8923 -2.3425 -2.7288 20 1 4.1574 -1.1357 -4.7876 21 1 5.6292 0.7779 -3.7685 22 1 3.5975 -2.9216 1.2396 23 1 4.5240 -3.1551 -0.3058 24 1 6.0958 -1.3617 0.2596 25 1 5.6293 -1.7616 1.9694 26 1 4.6195 0.5663 0.5906 27 1 3.6648 -0.2995 1.8712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260847936.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:42 Heat of formation + Delta-G solvation = 37.537879 kcal Electronic energy + Delta-G solvation = -12237.050050 eV Core-core repulsion = 10155.544192 eV Total energy + Delta-G solvation = -2081.505858 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.74431 -37.92445 -32.43946 -32.03923 -29.07467 -26.53742 -24.95048 -22.45357 -20.70131 -20.44841 -18.32465 -17.10668 -15.93809 -15.41719 -14.51634 -14.38791 -13.59037 -12.85952 -12.32382 -11.92830 -11.86339 -11.75100 -11.52937 -11.14747 -10.64843 -10.12753 -9.97781 -9.74355 -9.34280 -9.11863 -8.95107 -8.50992 -7.42276 -6.16635 -4.19238 2.64687 3.30895 3.39352 3.47915 3.55818 3.90437 4.43073 5.17210 5.46034 5.54673 5.66288 5.74807 5.83106 5.95407 6.19773 6.32476 6.62333 6.65296 6.67379 6.73525 6.87170 6.88251 7.11983 7.38050 7.45661 7.62511 8.10777 8.42817 8.85442 9.46628 10.94230 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.021021 C = 0.017306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.501771 B = 1331.682559 C = 1617.522941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.085 3.915 3 Si 0.860 3.140 4 H -0.275 1.275 5 H -0.237 1.237 6 H -0.297 1.297 7 C -0.500 4.500 8 H 0.082 0.918 9 C 0.094 3.906 10 C 0.056 3.944 11 C -0.226 4.226 12 C -0.212 4.212 13 C -0.088 4.088 14 O -0.179 6.179 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.151 4.151 18 H 0.266 0.734 19 H 0.140 0.860 20 H 0.135 0.865 21 H 0.186 0.814 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -0.567 -2.358 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.688 3.312 4 H -0.201 1.201 5 H -0.161 1.161 6 H -0.224 1.224 7 C -0.537 4.537 8 H 0.100 0.900 9 C 0.093 3.907 10 C 0.005 3.995 11 C -0.245 4.245 12 C -0.231 4.231 13 C -0.155 4.155 14 O -0.075 6.075 15 C -0.150 4.150 16 C -0.180 4.180 17 C -0.188 4.188 18 H 0.076 0.924 19 H 0.158 0.842 20 H 0.153 0.847 21 H 0.203 0.797 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.298 -0.262 -2.155 9.548 hybrid contribution 0.141 0.978 -0.440 1.082 sum 9.439 0.716 -2.596 9.815 Atomic orbital electron populations 1.69904 1.06435 1.27362 1.48810 1.24959 0.94557 0.99203 0.93244 0.87238 0.81322 0.83355 0.79327 1.20096 1.16124 1.22381 1.20646 0.87366 0.94942 1.50707 0.89990 1.18216 0.95685 0.93903 0.82924 1.23372 0.90224 0.87443 0.98411 1.21311 1.06411 1.05551 0.91223 1.21705 1.02021 0.99677 0.99704 1.23687 1.06198 1.03589 0.82033 1.84156 1.52404 1.47404 1.23554 1.22845 0.96514 0.95809 0.99820 1.22835 0.96785 0.98388 1.00011 1.23293 0.97612 0.96981 1.00962 0.92433 0.84178 0.84724 0.79690 0.89582 0.92814 0.91313 0.92449 0.92561 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.96 55.43 0.77 -26.17 15 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.86 21.80 24.28 -169.99 -4.13 17.67 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 5 H -0.24 -5.86 4.03 56.52 0.23 -5.63 15 6 H -0.30 -7.67 7.11 56.52 0.40 -7.27 15 7 C -0.50 -13.73 8.78 -34.44 -0.30 -14.03 15 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 15 9 C 0.09 2.19 0.61 -155.99 -0.10 2.10 15 10 C 0.06 1.30 4.39 -35.63 -0.16 1.14 15 11 C -0.23 -4.96 10.61 -39.70 -0.42 -5.38 15 12 C -0.21 -4.01 10.91 -39.70 -0.43 -4.44 15 13 C -0.09 -1.63 12.09 29.41 0.36 -1.27 15 14 O -0.18 -3.93 8.29 5.70 0.05 -3.88 15 15 C -0.11 -2.23 7.21 -25.92 -0.19 -2.42 15 16 C -0.14 -2.61 7.80 -25.92 -0.20 -2.81 15 17 C -0.15 -3.26 4.62 -25.92 -0.12 -3.37 15 18 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.14 3.02 8.06 -52.49 -0.42 2.60 15 20 H 0.13 2.11 8.06 -52.48 -0.42 1.69 15 21 H 0.19 2.56 8.06 -52.48 -0.42 2.14 15 22 H 0.09 1.66 8.09 -51.93 -0.42 1.24 15 23 H 0.05 1.00 8.10 -51.93 -0.42 0.58 15 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.06 1.23 5.70 -51.93 -0.30 0.93 15 27 H 0.09 1.86 7.91 -51.93 -0.41 1.45 15 LS Contribution 223.89 15.07 3.37 3.37 Total: -1.00 -30.26 223.89 -4.98 -35.24 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.39 Total: 1.94 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -1.66 Total: -28.17 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.05 Total: -3.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.13 Total: 17.67 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.26 -4.98 -35.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847936.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.779 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds