Wall clock time and date at job start Mon Mar 30 2020 20:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99614 * 2 1 4 4 H 1.48503 * 109.47162 * 94.99417 * 3 2 1 5 5 H 1.48506 * 109.47406 * 214.99205 * 3 2 1 6 6 H 1.48500 * 109.47387 * 334.99447 * 3 2 1 7 7 C 1.37875 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99781 * 353.66859 * 7 2 1 9 9 C 1.50698 * 120.00066 * 173.66180 * 7 2 1 10 10 C 1.50699 * 112.85327 * 286.81014 * 9 7 2 11 11 C 1.34508 * 125.78785 * 305.08375 * 10 9 7 12 12 C 1.41392 * 106.83784 * 179.89087 * 11 10 9 13 13 C 1.34510 * 106.83867 * 0.36950 * 12 11 10 14 14 O 1.34300 * 108.42568 * 359.77232 * 13 12 11 15 15 C 1.53785 * 113.61372 * 155.49789 * 9 7 2 16 16 C 1.53779 * 87.08093 * 220.02385 * 15 9 7 17 17 C 1.53773 * 87.08495 * 25.43640 * 16 15 9 18 18 H 0.96996 * 120.00475 * 0.02562 * 1 2 3 19 19 H 1.07993 * 126.58543 * 0.02562 * 11 10 9 20 20 H 1.08004 * 126.57592 * 180.12477 * 12 11 10 21 21 H 1.08005 * 125.78495 * 179.79835 * 13 12 11 22 22 H 1.08991 * 113.61645 * 334.57512 * 15 9 7 23 23 H 1.09006 * 113.60695 * 105.47429 * 15 9 7 24 24 H 1.09005 * 113.61564 * 270.88324 * 16 15 9 25 25 H 1.08997 * 113.61120 * 139.98646 * 16 15 9 26 26 H 1.08995 * 113.61516 * 220.02318 * 17 16 15 27 27 H 1.08997 * 113.61589 * 89.10949 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6021 1.9855 1.3948 5 1 3.4899 1.4731 -0.8029 6 1 1.3976 2.6808 -0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 1.4695 -2.1265 0.1022 9 6 3.5047 -1.1979 -0.1446 10 6 3.9591 -0.8711 -1.5438 11 6 3.5761 -1.5091 -2.6643 12 6 4.2384 -0.8773 -3.7420 13 6 4.9927 0.1036 -3.2147 14 8 4.8196 0.1028 -1.8829 15 6 4.1772 -2.4477 0.4475 16 6 5.2806 -1.5113 0.9675 17 6 4.2301 -0.3885 0.9435 18 1 -0.4850 0.8400 -0.0004 19 1 2.8923 -2.3425 -2.7288 20 1 4.1574 -1.1357 -4.7876 21 1 5.6292 0.7779 -3.7685 22 1 3.5975 -2.9216 1.2396 23 1 4.5240 -3.1551 -0.3058 24 1 6.0958 -1.3617 0.2596 25 1 5.6293 -1.7616 1.9694 26 1 4.6195 0.5663 0.5906 27 1 3.6648 -0.2995 1.8712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847936.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:41 Heat of formation + Delta-G solvation = 18.473861 kcal Electronic energy + Delta-G solvation = -12237.876727 eV Core-core repulsion = 10155.544192 eV Total energy + Delta-G solvation = -2082.332535 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.34812 -39.58995 -34.54421 -33.66978 -30.71926 -28.42992 -26.59591 -24.27689 -22.29621 -21.99542 -20.01477 -19.05272 -17.58943 -17.20524 -16.32752 -16.04492 -15.21759 -14.88726 -13.99709 -13.62284 -13.51700 -13.35198 -13.26937 -12.86100 -12.52461 -11.95616 -11.89305 -11.39725 -11.22245 -10.87575 -10.58423 -10.56182 -9.04389 -8.36229 -6.40966 1.08411 1.29572 1.35093 1.48055 1.93257 2.26586 2.37998 3.09753 3.85933 3.97092 4.08320 4.24004 4.35393 4.39163 4.61217 4.86707 5.03551 5.07180 5.10757 5.15204 5.25851 5.31808 5.48234 5.63497 5.79262 5.83540 6.20987 6.53156 6.65647 7.27854 8.78471 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.021021 C = 0.017306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.501771 B = 1331.682559 C = 1617.522941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.032 3.968 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.224 1.224 6 H -0.306 1.306 7 C -0.496 4.496 8 H 0.044 0.956 9 C 0.076 3.924 10 C 0.030 3.970 11 C -0.243 4.243 12 C -0.220 4.220 13 C -0.073 4.073 14 O -0.192 6.192 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.155 4.155 18 H 0.265 0.735 19 H 0.129 0.871 20 H 0.167 0.833 21 H 0.237 0.763 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 0.224 -3.064 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.167 4.167 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.147 1.147 6 H -0.234 1.234 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.075 3.925 10 C -0.021 4.021 11 C -0.262 4.262 12 C -0.239 4.239 13 C -0.139 4.139 14 O -0.089 6.089 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.192 4.192 18 H 0.074 0.926 19 H 0.147 0.853 20 H 0.185 0.815 21 H 0.253 0.747 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.041 0.510 -2.855 12.386 hybrid contribution -0.708 0.636 -0.307 1.000 sum 11.334 1.146 -3.162 11.822 Atomic orbital electron populations 1.70036 1.08123 1.28028 1.51649 1.25692 0.95086 1.02519 0.93413 0.86367 0.80338 0.79160 0.80059 1.18730 1.14665 1.23388 1.20868 0.90045 0.93245 1.49180 0.93810 1.18256 0.93094 0.96855 0.84293 1.22991 0.92112 0.88886 0.98079 1.21538 1.06453 1.05585 0.92622 1.22056 1.01644 0.99562 1.00640 1.24686 1.05293 1.03302 0.80666 1.84111 1.52331 1.46961 1.25466 1.22837 0.96914 0.95257 0.99864 1.22714 0.95685 0.95278 1.01911 1.23242 0.98517 0.97824 0.99658 0.92560 0.85257 0.81521 0.74726 0.89767 0.91911 0.90216 0.89408 0.92623 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.96 21.45 0.30 -58.65 15 2 C 0.03 1.86 5.47 84.65 0.46 2.33 15 3 Si 0.92 45.15 24.28 68.60 1.67 46.81 15 4 H -0.26 -12.25 7.11 99.48 0.71 -11.55 15 5 H -0.22 -10.44 4.03 99.48 0.40 -10.04 15 6 H -0.31 -15.42 7.11 99.48 0.71 -14.71 15 7 C -0.50 -27.97 8.78 25.60 0.22 -27.74 15 8 H 0.04 2.71 8.06 -2.91 -0.02 2.69 15 9 C 0.08 3.50 0.61 -53.14 -0.03 3.47 15 10 C 0.03 1.32 4.39 24.83 0.11 1.43 15 11 C -0.24 -10.40 10.61 22.19 0.24 -10.16 15 12 C -0.22 -7.63 10.91 22.19 0.24 -7.38 15 13 C -0.07 -2.39 12.09 66.97 0.81 -1.58 15 14 O -0.19 -7.81 8.29 -2.52 -0.02 -7.83 15 15 C -0.11 -4.27 7.21 31.12 0.22 -4.05 15 16 C -0.12 -3.96 7.80 31.12 0.24 -3.72 15 17 C -0.15 -6.37 4.62 31.12 0.14 -6.23 15 18 H 0.27 15.75 8.31 -92.71 -0.77 14.98 15 19 H 0.13 5.66 8.06 -2.91 -0.02 5.64 15 20 H 0.17 4.56 8.06 -2.91 -0.02 4.53 15 21 H 0.24 5.04 8.06 -2.91 -0.02 5.02 15 22 H 0.08 3.20 8.09 -2.39 -0.02 3.18 15 23 H 0.06 2.26 8.10 -2.38 -0.02 2.24 15 24 H 0.08 2.52 8.14 -2.38 -0.02 2.50 15 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.06 2.28 5.70 -2.39 -0.01 2.27 15 27 H 0.08 3.27 7.91 -2.39 -0.02 3.25 15 Total: -1.00 -66.33 223.89 5.45 -60.88 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.84 Total: 12.41 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 2.66 Total: -53.63 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.30 Total: -58.65 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.02 Total: -7.83 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.81 kcal Total: -66.33 5.45 -60.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847936.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.357 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds