Wall clock time and date at job start Mon Mar 30 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48506 * 109.47092 * 239.99800 * 3 2 1 5 5 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47064 * 120.00270 * 3 2 1 7 7 C 1.37877 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00337 * 185.32238 * 7 2 1 9 9 C 1.50699 * 119.99907 * 5.31920 * 7 2 1 10 10 H 1.08998 * 109.73825 * 335.06489 * 9 7 2 11 11 C 1.53451 * 109.74478 * 95.73534 * 9 7 2 12 12 C 1.52996 * 109.87167 * 170.37626 * 11 9 7 13 13 C 1.53442 * 109.87736 * 288.01172 * 12 11 9 14 14 C 1.50697 * 108.08330 * 50.64600 * 13 12 11 15 15 C 1.33509 * 129.48832 * 163.32616 * 14 13 12 16 16 O 1.34684 * 108.20298 * 180.15295 * 15 14 13 17 17 C 1.34689 * 109.55263 * 359.97438 * 16 15 14 18 18 C 1.33512 * 108.20435 * 359.96162 * 17 16 15 19 19 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.40243 * 290.49929 * 11 9 7 21 21 H 1.08996 * 109.39916 * 50.32964 * 11 9 7 22 22 H 1.08999 * 109.40531 * 48.14058 * 12 11 9 23 23 H 1.09002 * 109.40012 * 167.97449 * 12 11 9 24 24 H 1.09000 * 109.73758 * 170.29121 * 13 12 11 25 25 H 1.09000 * 109.74606 * 290.99839 * 13 12 11 26 26 H 1.07994 * 125.89906 * 0.16179 * 15 14 13 27 27 H 1.07999 * 125.90090 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0810 -1.1961 0.0862 9 6 1.2559 -2.4963 -0.1221 10 1 0.2344 -2.3684 0.2359 11 6 1.2385 -2.9493 -1.5881 12 6 0.6945 -4.3760 -1.6851 13 6 1.7297 -5.3674 -1.1374 14 6 2.1700 -4.8820 0.2196 15 6 2.8077 -5.5397 1.1908 16 8 2.9865 -4.6946 2.2241 17 6 2.4640 -3.4915 1.9180 18 6 1.9496 -3.5608 0.6879 19 1 -0.4850 0.8400 -0.0004 20 1 0.6026 -2.2792 -2.1666 21 1 2.2521 -2.9214 -1.9877 22 1 -0.2242 -4.4536 -1.1037 23 1 0.4842 -4.6132 -2.7280 24 1 1.2803 -6.3563 -1.0467 25 1 2.5875 -5.4124 -1.8084 26 1 3.1255 -6.5712 1.1541 27 1 2.4617 -2.6209 2.5571 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260888801.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:43 Heat of formation + Delta-G solvation = -23.612580 kcal Electronic energy + Delta-G solvation = -11883.100170 eV Core-core repulsion = 9798.942630 eV Total energy + Delta-G solvation = -2084.157540 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.27961 -38.12175 -34.93620 -32.35502 -32.22642 -28.90603 -26.92804 -24.28625 -22.69910 -21.40023 -19.65008 -18.50038 -17.71728 -16.63206 -16.41212 -15.54151 -15.02540 -14.82657 -14.47288 -14.03174 -13.51827 -13.12236 -12.83547 -12.72059 -12.51045 -12.23154 -11.95376 -11.50020 -11.14282 -10.86129 -10.59468 -9.90559 -9.17282 -8.14488 -6.24835 1.10964 1.39973 1.41473 1.49633 1.96899 2.42547 2.49444 3.13897 3.94779 4.14357 4.24627 4.31391 4.73737 4.79904 4.86529 4.95168 5.00345 5.06467 5.25665 5.37006 5.52486 5.55742 5.62875 5.81654 5.85645 5.96340 6.32212 6.54071 6.90564 7.41597 8.93425 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.043669 B = 0.013119 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.026008 B = 2133.853683 C = 2555.658667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.046 0.954 9 C 0.090 3.910 10 H 0.028 0.972 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.038 4.038 14 C -0.207 4.207 15 C -0.044 4.044 16 O -0.198 6.198 17 C -0.064 4.064 18 C -0.167 4.167 19 H 0.263 0.737 20 H 0.029 0.971 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.241 0.759 27 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -9.452 -0.618 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.072 3.928 10 H 0.046 0.954 11 C -0.135 4.135 12 C -0.151 4.151 13 C -0.075 4.075 14 C -0.208 4.208 15 C -0.110 4.110 16 O -0.096 6.096 17 C -0.129 4.129 18 C -0.168 4.168 19 H 0.072 0.928 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.257 0.743 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.827 -9.390 -0.359 10.146 hybrid contribution 0.055 1.438 -0.070 1.440 sum 3.883 -7.952 -0.428 8.860 Atomic orbital electron populations 1.70037 1.07390 1.27581 1.51623 1.25765 0.95617 1.02543 0.94492 0.85668 0.78435 0.78955 0.78981 1.19648 1.20804 1.19423 1.21287 0.92916 0.91518 1.50159 0.93522 1.17415 0.94751 0.89812 0.90839 0.95378 1.21547 0.98676 0.95167 0.98083 1.21582 0.98070 0.94639 1.00819 1.20064 0.98442 0.98496 0.90533 1.20837 1.05817 0.94269 0.99866 1.24068 1.03995 0.97159 0.85804 1.84160 1.64558 1.20259 1.40673 1.23457 1.03353 0.87423 0.98713 1.21159 1.03138 0.96547 0.95973 0.92784 0.95225 0.94144 0.93649 0.90440 0.88708 0.90251 0.74305 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 12.78 21.45 0.27 -54.89 15 2 C 0.01 0.81 5.45 84.66 0.46 1.27 15 3 Si 0.95 44.18 29.54 68.60 2.03 46.20 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 7 C -0.52 -29.39 8.02 25.60 0.21 -29.18 15 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 15 9 C 0.09 4.75 2.63 -12.14 -0.03 4.71 15 10 H 0.03 1.68 7.25 -2.39 -0.02 1.66 15 11 C -0.10 -4.46 5.16 30.74 0.16 -4.30 15 12 C -0.11 -4.09 5.85 30.74 0.18 -3.91 15 13 C -0.04 -1.18 6.30 30.00 0.19 -0.99 15 14 C -0.21 -7.68 5.93 -20.03 -0.12 -7.80 15 15 C -0.04 -1.40 12.07 66.75 0.81 -0.59 15 16 O -0.20 -7.39 10.68 -10.05 -0.11 -7.50 15 17 C -0.06 -2.73 11.67 66.75 0.78 -1.96 15 18 C -0.17 -7.68 5.44 -20.03 -0.11 -7.79 15 19 H 0.26 14.83 8.31 -92.71 -0.77 14.06 15 20 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.04 1.85 8.07 -2.39 -0.02 1.83 15 22 H 0.04 1.72 8.10 -2.39 -0.02 1.70 15 23 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.24 4.78 8.06 -2.91 -0.02 4.75 15 27 H 0.20 8.16 8.06 -2.91 -0.02 8.14 15 Total: -1.00 -64.58 231.08 5.86 -58.72 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.15 Total: 8.01 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 2.52 Total: -50.55 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.27 Total: -54.89 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.11 Total: -7.50 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.58 5.86 -58.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888801.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.106 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds