Wall clock time and date at job start Mon Mar 30 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47268 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46975 * 120.00362 * 3 2 1 6 6 H 1.48501 * 109.47128 * 239.99718 * 3 2 1 7 7 C 1.37879 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99972 * 173.05886 * 7 2 1 9 9 C 1.50704 * 120.00032 * 353.05694 * 7 2 1 10 10 H 1.09004 * 109.73352 * 329.76683 * 9 7 2 11 11 C 1.53489 * 109.74598 * 90.49035 * 9 7 2 12 12 C 1.53109 * 109.31230 * 168.33324 * 11 9 7 13 13 C 1.53278 * 109.71177 * 290.09487 * 12 11 9 14 14 N 1.46478 * 108.68922 * 50.76968 * 13 12 11 15 15 C 1.34407 * 128.44253 * 162.61639 * 14 13 12 16 16 N 1.30783 * 108.55362 * 180.20542 * 15 14 13 17 17 C 1.34429 * 109.32219 * 359.94317 * 16 15 14 18 18 C 1.33866 * 107.79303 * 359.97438 * 17 16 15 19 19 H 0.96997 * 120.00087 * 174.71009 * 1 2 3 20 20 H 1.09000 * 109.50074 * 288.29018 * 11 9 7 21 21 H 1.09008 * 109.49254 * 48.38724 * 11 9 7 22 22 H 1.09001 * 109.42627 * 170.02481 * 12 11 9 23 23 H 1.08999 * 109.38929 * 50.14820 * 12 11 9 24 24 H 1.08999 * 109.60391 * 291.01136 * 13 12 11 25 25 H 1.08996 * 109.73343 * 170.60949 * 13 12 11 26 26 H 1.07999 * 125.72125 * 0.22759 * 15 14 13 27 27 H 1.08000 * 126.10049 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0786 -1.1975 -0.1136 9 6 1.2592 -2.4945 0.1567 10 1 0.3664 -2.3362 0.7617 11 6 0.8622 -3.0348 -1.2240 12 6 0.3715 -4.4781 -1.0810 13 6 1.5508 -5.3929 -0.7321 14 7 2.2712 -4.8167 0.4057 15 6 3.1473 -5.4158 1.2303 16 7 3.5522 -4.5410 2.1141 17 6 2.9504 -3.3618 1.8808 18 6 2.1495 -3.5143 0.8191 19 1 -0.4850 -0.8364 -0.0774 20 1 0.0650 -2.4190 -1.6403 21 1 1.7269 -3.0086 -1.8873 22 1 -0.0747 -4.8041 -2.0206 23 1 -0.3746 -4.5297 -0.2881 24 1 2.2207 -5.4687 -1.5885 25 1 1.1821 -6.3839 -0.4674 26 1 3.4641 -6.4467 1.1724 27 1 3.0891 -2.4534 2.4481 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:10 Heat of formation + Delta-G solvation = 44.052734 kcal Electronic energy + Delta-G solvation = -11986.660442 eV Core-core repulsion = 9937.729841 eV Total energy + Delta-G solvation = -2048.930601 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.49915 -36.14245 -33.74515 -31.13160 -29.69849 -26.93986 -25.03785 -22.46621 -21.34963 -20.52167 -18.37886 -17.14502 -16.17714 -15.14380 -13.89172 -13.76333 -13.55537 -13.40875 -13.00613 -12.67021 -12.29830 -11.73562 -10.99759 -10.84247 -10.66022 -10.35179 -10.11800 -9.87625 -9.18653 -8.92687 -8.70529 -8.40457 -7.43405 -6.42074 -4.15662 2.89527 3.41565 3.45400 3.48108 3.63797 3.97079 4.49988 4.95626 5.09486 5.20680 5.27452 5.37558 5.67023 5.87201 5.96060 6.09361 6.32224 6.53681 6.60106 6.71132 6.99953 7.17889 7.40297 7.63306 7.97389 8.09842 8.39122 8.75885 8.85735 9.54542 10.93849 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.044870 B = 0.013492 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.878895 B = 2074.788315 C = 2532.790790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.583 4.583 8 H 0.053 0.947 9 C 0.096 3.904 10 H 0.051 0.949 11 C -0.117 4.117 12 C -0.137 4.137 13 C 0.111 3.889 14 N -0.467 5.467 15 C 0.144 3.856 16 N -0.504 5.504 17 C -0.040 4.040 18 C 0.033 3.967 19 H 0.269 0.731 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.191 0.809 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -8.423 -2.631 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.622 4.622 8 H 0.072 0.928 9 C 0.076 3.924 10 H 0.069 0.931 11 C -0.155 4.155 12 C -0.175 4.175 13 C -0.012 4.012 14 N -0.152 5.152 15 C -0.137 4.137 16 N -0.223 5.223 17 C -0.185 4.185 18 C -0.081 4.081 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.208 0.792 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.311 -7.015 -2.031 7.420 hybrid contribution -0.288 -1.740 -0.826 1.947 sum 1.024 -8.755 -2.858 9.266 Atomic orbital electron populations 1.70816 1.06906 1.30755 1.45788 1.25857 0.96380 1.02586 0.93191 0.83578 0.74974 0.75254 0.76778 1.20774 1.21148 1.21441 1.21772 0.94968 0.90545 1.54884 0.92845 1.17732 0.93469 0.90687 0.90473 0.93085 1.21978 1.00444 0.92026 1.01094 1.21977 0.96348 0.97595 1.01577 1.21814 0.94560 0.97127 0.87652 1.45462 1.34345 1.10625 1.24816 1.24436 0.97045 0.99941 0.92291 1.70360 1.25952 1.01290 1.24711 1.21704 1.00478 0.96290 1.00042 1.22195 1.03245 0.84275 0.98416 0.91967 0.91825 0.92759 0.91007 0.91643 0.90741 0.90346 0.79178 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.15 13.55 55.43 0.75 -25.40 15 2 C 0.02 0.67 5.45 -17.82 -0.10 0.58 15 3 Si 1.07 24.60 29.91 -169.99 -5.08 19.51 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.58 -15.83 7.99 -34.44 -0.28 -16.10 15 8 H 0.05 1.50 7.82 -52.48 -0.41 1.09 15 9 C 0.10 2.34 2.11 -92.66 -0.20 2.15 15 10 H 0.05 1.35 6.94 -51.93 -0.36 0.99 15 11 C -0.12 -2.45 5.23 -26.42 -0.14 -2.58 15 12 C -0.14 -2.21 5.92 -26.53 -0.16 -2.37 15 13 C 0.11 1.66 7.00 -3.91 -0.03 1.63 15 14 N -0.47 -8.95 3.13 -114.09 -0.36 -9.31 15 15 C 0.14 2.66 12.66 -90.72 -1.15 1.51 15 16 N -0.50 -11.02 11.27 -14.87 -0.17 -11.19 15 17 C -0.04 -0.94 11.42 -17.95 -0.20 -1.14 15 18 C 0.03 0.75 6.08 -81.73 -0.50 0.25 15 19 H 0.27 7.63 6.49 -40.82 -0.26 7.36 15 20 H 0.06 1.39 7.77 -51.93 -0.40 0.98 15 21 H 0.05 1.16 8.08 -51.92 -0.42 0.74 15 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.06 1.09 8.11 -51.93 -0.42 0.66 15 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.19 2.61 8.06 -52.49 -0.42 2.18 15 27 H 0.17 3.83 8.06 -52.49 -0.42 3.41 15 LS Contribution 228.79 15.07 3.45 3.45 Total: -1.00 -30.71 228.79 -7.34 -38.05 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.19 Total: 0.96 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.74 Total: -16.08 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.23 Total: -45.89 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.71 -7.34 -38.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.106 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds