Wall clock time and date at job start Mon Mar 30 2020 20:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48495 * 109.47088 * 270.00080 * 3 2 1 5 5 H 1.48506 * 109.47382 * 29.99721 * 3 2 1 6 6 H 1.48494 * 109.47410 * 150.00013 * 3 2 1 7 7 C 1.37873 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99607 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00316 * 0.28073 * 7 2 1 10 10 H 1.08995 * 110.99837 * 0.56049 * 9 7 2 11 11 C 1.54936 * 111.14206 * 124.79883 * 9 7 2 12 12 C 1.51398 * 104.37848 * 92.71119 * 11 9 7 13 13 O 1.21286 * 124.89893 * 189.37390 * 12 11 9 14 14 N 1.34614 * 110.20250 * 9.33848 * 12 11 9 15 15 C 1.47263 * 143.36278 * 195.05565 * 14 12 11 16 16 C 1.54464 * 107.34529 * 167.71892 * 15 14 12 17 17 C 1.55570 * 103.14139 * 342.57918 * 16 15 14 18 18 C 1.48042 * 109.42521 * 11.99192 * 14 12 11 19 19 H 1.09004 * 112.07797 * 92.65452 * 18 14 12 20 20 H 0.96993 * 120.00024 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.45219 * 211.43533 * 11 9 7 22 22 H 1.09001 * 110.45363 * 333.86487 * 11 9 7 23 23 H 1.08996 * 109.86886 * 287.15827 * 15 14 12 24 24 H 1.08996 * 109.87017 * 48.27801 * 15 14 12 25 25 H 1.08999 * 110.68305 * 100.99388 * 16 15 14 26 26 H 1.09001 * 110.68171 * 224.00009 * 16 15 14 27 27 H 1.09000 * 111.21224 * 153.59060 * 17 16 15 28 28 H 1.08997 * 111.21403 * 277.93476 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 -0.0053 10 1 0.1746 -2.3287 -0.0195 11 6 1.6909 -3.3931 -1.1918 12 6 2.7910 -4.2621 -0.6203 13 8 3.5101 -4.9895 -1.2721 14 7 2.8566 -4.1103 0.7157 15 6 3.7050 -4.3603 1.8931 16 6 3.1078 -3.5574 3.0698 17 6 2.1831 -2.5263 2.3613 18 6 1.6584 -3.3801 1.1876 19 1 0.8573 -4.0566 1.4856 20 1 -0.4850 0.8400 0.0004 21 1 0.8587 -4.0083 -1.5342 22 1 2.0723 -2.7809 -2.0090 23 1 3.7034 -5.4238 2.1317 24 1 4.7228 -4.0248 1.6944 25 1 2.5283 -4.2078 3.7249 26 1 3.8947 -3.0517 3.6295 27 1 1.3695 -2.2118 3.0148 28 1 2.7513 -1.6682 2.0025 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259813708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:50 Heat of formation + Delta-G solvation = -32.125150 kcal Electronic energy + Delta-G solvation = -12684.459082 eV Core-core repulsion = 10507.195019 eV Total energy + Delta-G solvation = -2177.264063 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.83634 -36.64884 -33.81643 -32.10276 -30.09425 -26.99890 -25.70380 -23.61846 -20.73675 -19.76340 -18.45372 -16.85783 -15.80714 -15.26283 -14.52366 -14.10989 -13.90010 -13.07412 -12.42725 -12.41849 -12.13945 -11.81083 -11.30514 -11.05838 -10.98069 -10.69486 -10.63602 -10.18459 -9.78177 -9.56474 -9.14658 -8.81476 -8.60400 -7.86350 -6.17600 -4.18489 3.22764 3.30906 3.33767 3.37703 3.82315 4.31877 5.00094 5.11429 5.40094 5.46315 5.66852 5.92389 6.00168 6.12123 6.18569 6.30436 6.44015 6.51015 6.61260 6.69101 7.10375 7.19565 7.31859 7.55683 7.75878 8.17114 8.28037 8.89307 9.04539 9.43396 10.91478 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.037669 B = 0.014252 C = 0.012367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.140679 B = 1964.163303 C = 2263.605160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.032 3.968 10 H 0.087 0.913 11 C -0.147 4.147 12 C 0.546 3.454 13 O -0.570 6.570 14 N -0.628 5.628 15 C 0.137 3.863 16 C -0.140 4.140 17 C -0.110 4.110 18 C 0.088 3.912 19 H 0.062 0.938 20 H 0.264 0.736 21 H 0.077 0.923 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -3.155 5.390 6.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.013 3.987 10 H 0.105 0.895 11 C -0.188 4.188 12 C 0.337 3.663 13 O -0.450 6.450 14 N -0.363 5.363 15 C 0.015 3.985 16 C -0.178 4.178 17 C -0.148 4.148 18 C -0.017 4.017 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.194 -3.533 4.990 6.496 hybrid contribution 0.498 0.837 0.084 0.978 sum 2.692 -2.696 5.074 6.345 Atomic orbital electron populations 1.69868 1.05955 1.27028 1.49782 1.24967 0.94845 0.99248 0.94248 0.86613 0.79910 0.83296 0.78359 1.20528 1.21117 1.19775 1.20786 0.92785 0.89603 1.50749 0.92586 1.19904 1.00355 0.91719 0.86718 0.89476 1.22805 0.95917 0.97755 1.02294 1.21178 0.84856 0.80681 0.79573 1.90582 1.49136 1.41283 1.63969 1.49213 1.22465 1.58431 1.06163 1.21661 0.93991 0.98541 0.84269 1.22911 1.00011 0.98548 0.96367 1.22752 0.98720 0.97914 0.95385 1.23151 0.87507 0.93026 0.97994 0.92010 0.92603 0.90515 0.88599 0.92875 0.92252 0.91629 0.91011 0.91376 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 12.66 55.43 0.70 -22.99 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.50 -12.52 6.03 -34.44 -0.21 -12.73 15 8 H 0.06 1.45 7.59 -52.49 -0.40 1.05 15 9 C 0.03 0.74 3.33 -90.34 -0.30 0.44 15 10 H 0.09 2.15 7.03 -51.93 -0.37 1.78 15 11 C -0.15 -3.20 6.39 -26.52 -0.17 -3.36 15 12 C 0.55 12.46 8.39 -10.72 -0.09 12.37 15 13 O -0.57 -14.49 18.03 5.55 0.10 -14.39 15 14 N -0.63 -12.90 3.80 -161.95 -0.62 -13.51 15 15 C 0.14 2.30 7.70 -2.86 -0.02 2.28 15 16 C -0.14 -2.07 6.93 -24.60 -0.17 -2.24 15 17 C -0.11 -2.01 6.21 -24.67 -0.15 -2.17 15 18 C 0.09 1.76 3.68 -65.98 -0.24 1.52 15 19 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 20 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 22 H 0.10 2.14 7.92 -51.93 -0.41 1.73 15 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.10 2.15 5.96 -51.93 -0.31 1.84 15 LS Contribution 233.27 15.07 3.52 3.52 Total: -1.00 -28.55 233.27 -6.35 -34.90 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.58 Total: -0.35 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.45 Total: -2.21 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.09 Total: -36.50 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.39 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.55 -6.35 -34.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.777 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds