Wall clock time and date at job start Mon Mar 30 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47555 * 239.99893 * 3 2 1 5 5 H 1.48498 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46977 * 119.99855 * 3 2 1 7 7 C 1.37879 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00539 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00000 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47100 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47396 * 180.02562 * 12 11 10 14 14 C 1.35308 * 125.86944 * 124.99861 * 13 12 11 15 15 C 1.35347 * 106.17713 * 180.02562 * 14 13 12 16 16 N 1.33774 * 106.49812 * 0.02562 * 15 14 13 17 17 N 1.28637 * 108.88333 * 0.02562 * 16 15 14 18 18 H 0.96995 * 119.99578 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47382 * 59.99547 * 9 7 2 20 20 H 1.09000 * 109.47336 * 299.99594 * 9 7 2 21 21 H 1.00902 * 110.99786 * 56.04826 * 10 9 7 22 22 H 1.09001 * 109.46760 * 60.00435 * 11 10 9 23 23 H 1.08993 * 109.47584 * 300.00059 * 11 10 9 24 24 H 1.09001 * 109.46828 * 60.00637 * 12 11 10 25 25 H 1.08993 * 109.47081 * 300.00527 * 12 11 10 26 26 H 1.07997 * 126.91159 * 0.02959 * 14 13 12 27 27 H 1.08002 * 126.75518 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5303 -6.0431 0.0005 13 7 1.8320 -7.3309 0.0005 14 6 2.0065 -8.3274 -0.8980 15 6 1.1688 -9.3228 -0.5246 16 7 0.5307 -8.8920 0.5693 17 7 0.9454 -7.7081 0.8541 18 1 -0.4849 0.8400 0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 2.8405 -3.5487 0.7819 22 1 0.8802 -4.9817 -0.8887 23 1 0.8808 -4.9813 0.8913 24 1 3.1557 -5.9686 0.8901 25 1 3.1545 -5.9687 -0.8899 26 1 2.6790 -8.3284 -1.7430 27 1 1.0402 -10.2769 -1.0141 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163825487.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:52 Heat of formation + Delta-G solvation = 70.891165 kcal Electronic energy + Delta-G solvation = -11623.602079 eV Core-core repulsion = 9417.671980 eV Total energy + Delta-G solvation = -2205.930100 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.15846 -37.86143 -35.64598 -34.30378 -31.94352 -30.74235 -27.95492 -24.81821 -23.66073 -23.26235 -22.18078 -18.70111 -18.39153 -17.31652 -16.92025 -16.50359 -15.76872 -15.33249 -15.11951 -14.53619 -14.27318 -13.80974 -13.15265 -12.81172 -12.66618 -12.63782 -12.40152 -12.06685 -11.86460 -11.41961 -11.04470 -10.68280 -10.31569 -9.33305 -8.24947 -6.37303 0.69699 1.41803 1.45352 1.45952 1.54227 1.66223 2.39385 3.09138 3.37103 3.61073 3.78296 3.92011 4.23418 4.27929 4.35290 4.54401 4.70851 4.91904 5.02347 5.17280 5.31456 5.55298 5.68312 5.93875 6.26820 6.59813 6.82825 7.34141 7.55300 8.86823 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.109628 B = 0.005650 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.346916 B = 4954.479548 C = 5091.322218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.674 5.674 11 C 0.053 3.947 12 C 0.126 3.874 13 N -0.288 5.288 14 C -0.031 4.031 15 C -0.067 4.067 16 N -0.316 5.316 17 N -0.136 5.136 18 H 0.266 0.734 19 H 0.000 1.000 20 H -0.040 1.040 21 H 0.343 0.657 22 H 0.058 0.942 23 H 0.018 0.982 24 H 0.113 0.887 25 H 0.148 0.852 26 H 0.238 0.762 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -13.581 -3.381 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.079 3.921 10 N -0.306 5.306 11 C -0.078 4.078 12 C 0.006 3.994 13 N -0.082 5.082 14 C -0.183 4.183 15 C -0.225 4.225 16 N -0.181 5.181 17 N -0.116 5.116 18 H 0.074 0.926 19 H 0.018 0.982 20 H -0.022 1.022 21 H 0.161 0.839 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.131 0.869 25 H 0.166 0.834 26 H 0.254 0.746 27 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 7.259 -13.043 -2.777 15.183 hybrid contribution 0.034 0.673 0.045 0.675 sum 7.293 -12.371 -2.732 14.618 Atomic orbital electron populations 1.70099 1.08038 1.28216 1.51310 1.26024 0.95769 1.03696 0.94465 0.85317 0.78004 0.77229 0.79346 1.18953 1.21152 1.18917 1.21512 0.94122 0.90977 1.50922 0.90882 1.19226 0.90649 0.88846 0.93351 1.60510 1.20232 1.00349 1.49469 1.21993 0.95761 0.89793 1.00248 1.22191 0.93471 0.75660 1.08106 1.47713 1.26838 1.15207 1.18484 1.24538 1.05807 0.88370 0.99562 1.24325 0.98228 1.03485 0.96452 1.75051 1.23174 1.03654 1.16216 1.78321 1.06722 1.09484 1.17033 0.92580 0.98168 1.02235 0.83883 0.92300 0.96375 0.86912 0.83392 0.74574 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.61 13.29 21.45 0.28 -56.33 15 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 15 3 Si 0.98 43.29 29.54 68.60 2.03 45.31 15 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.29 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.54 -29.79 9.32 25.60 0.24 -29.55 15 8 H 0.07 3.82 7.81 -2.91 -0.02 3.80 15 9 C 0.21 10.91 5.44 85.56 0.47 11.38 15 10 N -0.67 -26.60 6.49 -517.92 -3.36 -29.97 15 11 C 0.05 1.77 5.81 86.30 0.50 2.27 15 12 C 0.13 2.84 6.72 86.38 0.58 3.42 15 13 N -0.29 -7.29 3.44 -347.74 -1.20 -8.49 15 14 C -0.03 -0.56 11.57 83.49 0.97 0.40 15 15 C -0.07 -1.41 12.05 83.73 1.01 -0.40 15 16 N -0.32 -9.95 12.41 -58.26 -0.72 -10.67 15 17 N -0.14 -4.53 12.91 37.02 0.48 -4.05 15 18 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 19 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 20 H -0.04 -2.32 8.14 -2.39 -0.02 -2.34 15 21 H 0.34 12.30 8.72 -89.69 -0.78 11.52 15 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.02 0.69 8.12 -2.39 -0.02 0.67 15 24 H 0.11 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.15 2.36 8.07 -2.39 -0.02 2.34 15 26 H 0.24 1.71 8.06 -2.91 -0.02 1.68 15 27 H 0.22 2.72 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -72.13 245.47 2.11 -70.02 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.38 Total: 6.25 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.22 Total: -12.09 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.52 Total: -109.50 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -72.13 2.11 -70.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163825487.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.912 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds