Wall clock time and date at job start Mon Mar 30 2020 20:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.17520 * 299.99540 * 9 7 2 11 11 C 1.53722 * 109.17639 * 180.71137 * 9 7 2 12 12 N 1.45470 * 107.57511 * 183.61977 * 11 9 7 13 13 C 1.46163 * 117.91884 * 183.56658 * 12 11 9 14 14 C 1.54890 * 105.84141 * 207.70859 * 13 12 11 15 15 C 1.56141 * 105.23745 * 4.50061 * 14 13 12 16 16 C 1.48798 * 109.26774 * 63.33314 * 12 11 9 17 17 H 1.08997 * 111.10424 * 53.20102 * 16 12 11 18 18 C 1.52292 * 107.06025 * 291.95185 * 16 12 11 19 19 N 1.46595 * 109.18426 * 59.28916 * 9 7 2 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.83350 * 303.18623 * 11 9 7 22 22 H 1.08995 * 109.83986 * 64.15226 * 11 9 7 23 23 H 1.09003 * 110.17681 * 326.80070 * 13 12 11 24 24 H 1.08998 * 110.18082 * 88.62067 * 13 12 11 25 25 H 1.09001 * 110.34260 * 122.82177 * 14 13 12 26 26 H 1.08996 * 110.34094 * 244.97707 * 14 13 12 27 27 H 1.08996 * 110.70709 * 263.50052 * 15 14 13 28 28 H 1.09010 * 111.46029 * 139.62641 * 15 14 13 29 29 H 1.08999 * 109.86387 * 303.02646 * 18 16 12 30 30 H 1.09007 * 109.92003 * 182.03057 * 18 16 12 31 31 H 1.00899 * 110.99840 * 300.40022 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8699 -0.6788 -0.8911 11 6 4.0165 -2.6459 -0.0188 12 7 5.4680 -2.6072 0.0699 13 6 6.1925 -3.8741 -0.0100 14 6 7.5050 -3.6615 0.7845 15 6 7.3863 -2.2304 1.3976 16 6 5.8646 -2.0068 1.3723 17 1 5.3810 -2.5189 2.2040 18 6 5.4610 -0.5390 1.3289 19 7 3.9928 -0.4878 1.1911 20 1 -0.4850 0.8401 0.0004 21 1 3.6076 -3.1907 0.8321 22 1 3.7162 -3.1300 -0.9480 23 1 5.6044 -4.6727 0.4423 24 1 6.4170 -4.1141 -1.0493 25 1 7.5880 -4.3985 1.5833 26 1 8.3656 -3.7265 0.1189 27 1 7.8977 -1.4993 0.7715 28 1 7.7672 -2.2010 2.4185 29 1 5.9305 -0.0508 0.4748 30 1 5.7639 -0.0431 2.2512 31 1 3.6613 0.4651 1.2049 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259579708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:53 Heat of formation + Delta-G solvation = 17.958269 kcal Electronic energy + Delta-G solvation = -13040.374919 eV Core-core repulsion = 10935.689820 eV Total energy + Delta-G solvation = -2104.685099 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.32060 -35.34841 -32.37477 -31.82089 -29.39623 -27.68650 -24.48128 -23.16546 -20.74709 -20.59666 -19.04562 -16.77171 -15.83957 -15.34778 -14.70914 -14.27818 -13.89792 -13.51230 -12.84529 -12.63715 -12.48073 -12.13233 -11.87781 -11.25257 -10.96053 -10.94837 -10.51901 -10.40591 -10.09272 -10.03404 -9.47306 -9.30115 -8.64397 -7.82281 -7.32617 -6.11579 -4.11598 3.21801 3.28457 3.32102 4.33716 4.45087 4.78238 4.92628 5.06446 5.16891 5.41982 5.63515 5.73253 5.80822 5.87573 5.96175 6.01691 6.10772 6.17835 6.24027 6.29449 6.45982 6.50278 6.67080 7.10827 7.37126 7.56971 7.82184 8.20613 8.32153 8.51975 8.92451 9.50035 11.01646 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.061780 B = 0.011612 C = 0.010293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.115612 B = 2410.820893 C = 2719.760724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.291 1.291 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.191 3.809 10 H 0.004 0.996 11 C 0.084 3.916 12 N -0.548 5.548 13 C 0.051 3.949 14 C -0.125 4.125 15 C -0.115 4.115 16 C 0.072 3.928 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.691 5.691 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.485 -3.497 1.940 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.218 1.218 7 C -0.541 4.541 8 H 0.096 0.904 9 C 0.084 3.916 10 H 0.021 0.979 11 C -0.044 4.044 12 N -0.273 5.273 13 C -0.077 4.077 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.037 4.037 17 H 0.076 0.924 18 C -0.065 4.065 19 N -0.330 5.330 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.326 -3.650 1.877 13.943 hybrid contribution 0.261 1.019 0.004 1.052 sum 13.586 -2.631 1.881 13.966 Atomic orbital electron populations 1.69880 1.06126 1.26981 1.50369 1.24972 0.94732 0.98866 0.94125 0.86989 0.80084 0.84131 0.78285 1.19852 1.19488 1.21764 1.20998 0.88192 0.94780 1.50169 0.90358 1.19579 0.95186 0.89880 0.86987 0.97854 1.21966 0.83660 0.98701 1.00040 1.62774 1.10453 1.21900 1.32180 1.22423 0.94019 0.91308 0.99976 1.22750 0.97575 0.97012 0.99003 1.22462 0.95872 0.96739 1.00293 1.22500 0.93934 0.95887 0.91343 0.92398 1.21842 0.90750 0.94719 0.99233 1.60837 1.07369 1.19294 1.45502 0.92509 0.94713 0.91221 0.94817 0.91055 0.91957 0.91393 0.90996 0.91326 0.95288 0.91875 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.79 24.60 -169.99 -4.18 17.61 16 4 H -0.27 -6.52 6.98 56.52 0.39 -6.12 16 5 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.50 -14.45 9.33 -34.44 -0.32 -14.77 16 8 H 0.08 2.41 7.98 -52.49 -0.42 1.99 16 9 C 0.19 4.77 2.15 -68.66 -0.15 4.62 16 10 H 0.00 0.10 7.19 -51.93 -0.37 -0.27 16 11 C 0.08 1.83 5.24 -4.22 -0.02 1.81 16 12 N -0.55 -10.29 4.67 -225.14 -1.05 -11.34 16 13 C 0.05 0.77 6.88 -3.23 -0.02 0.74 16 14 C -0.13 -1.55 7.01 -24.05 -0.17 -1.72 16 15 C -0.12 -1.55 6.70 -24.62 -0.16 -1.72 16 16 C 0.07 1.26 2.72 -66.59 -0.18 1.08 16 17 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 18 C 0.06 1.24 6.37 -3.82 -0.02 1.22 16 19 N -0.69 -16.29 6.36 -107.66 -0.68 -16.97 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 22 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 23 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.32 7.76 3.89 -39.29 -0.15 7.61 16 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -30.47 238.75 -7.45 -37.92 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.76 Total: 2.50 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.15 Total: -6.62 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.96 Total: -55.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.18 Total: 17.61 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.47 -7.45 -37.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.883 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds