Wall clock time and date at job start Mon Mar 30 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86804 * 119.99590 * 2 1 4 4 H 1.48501 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47182 * 299.99543 * 3 2 1 6 6 H 1.48494 * 109.47457 * 59.99614 * 3 2 1 7 7 C 1.40047 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.46370 * 119.99938 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99989 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00134 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00480 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47474 * 180.02562 * 12 11 9 14 14 N 1.34497 * 126.28727 * 269.97418 * 13 12 11 15 15 C 1.31126 * 105.61473 * 180.02562 * 14 13 12 16 16 O 1.33644 * 106.89983 * 359.97438 * 15 14 13 17 17 N 1.21297 * 109.80913 * 0.02562 * 16 15 14 18 18 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 19 19 H 0.97004 * 119.99619 * 0.02562 * 11 9 7 20 20 H 1.08999 * 109.47056 * 60.00082 * 12 11 9 21 21 H 1.09003 * 109.46948 * 300.00480 * 12 11 9 22 22 H 1.08005 * 126.55289 * 180.26876 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0017 10 8 0.0584 -2.4805 0.0017 11 7 1.9491 -3.6476 0.0017 12 6 1.2167 -4.9164 0.0022 13 6 2.1960 -6.0618 0.0028 14 7 2.7129 -6.6676 -1.0811 15 6 3.5099 -7.6001 -0.6178 16 8 3.4534 -7.5321 0.7157 17 7 2.6961 -6.6457 1.0504 18 1 -0.4850 0.8400 -0.0004 19 1 2.9191 -3.6475 0.0013 20 1 0.5897 -4.9744 -0.8875 21 1 0.5903 -4.9739 0.8925 22 1 4.1028 -8.2882 -1.2021 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231806733.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:51 Heat of formation + Delta-G solvation = 32.413873 kcal Electronic energy + Delta-G solvation = -11772.258154 eV Core-core repulsion = 9331.107797 eV Total energy + Delta-G solvation = -2441.150357 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.56428 -37.49458 -35.85698 -33.50037 -32.46020 -31.73420 -27.74182 -25.57163 -24.05894 -22.16250 -19.82982 -18.16632 -17.94513 -17.09435 -15.76350 -15.37410 -14.63720 -14.08534 -13.52656 -12.93658 -12.42205 -12.20732 -11.67558 -11.54793 -11.16531 -11.04286 -10.91326 -10.52158 -10.24342 -10.09681 -8.89027 -7.69977 -7.65906 -6.22735 -4.68233 1.23981 2.28176 3.05164 3.12443 3.20511 3.25321 3.81042 4.10074 4.23785 4.54875 4.94263 5.16279 5.64991 5.73057 5.98153 6.18295 6.25833 7.40688 7.78877 7.94788 8.25067 8.27000 8.98719 9.41405 10.53697 10.71672 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.078114 B = 0.007544 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.364108 B = 3710.851552 C = 3901.399880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.760 5.760 12 C 0.221 3.779 13 C 0.169 3.831 14 N -0.475 5.475 15 C 0.147 3.853 16 O 0.076 5.924 17 N -0.372 5.372 18 H 0.269 0.731 19 H 0.382 0.618 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -11.119 -1.052 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.418 5.418 12 C 0.095 3.905 13 C -0.104 4.104 14 N -0.208 5.208 15 C -0.095 4.095 16 O 0.015 5.985 17 N -0.079 5.079 18 H 0.080 0.920 19 H 0.213 0.787 20 H 0.101 0.899 21 H 0.096 0.904 22 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 6.422 -10.519 -0.542 12.336 hybrid contribution 1.171 0.442 -0.217 1.270 sum 7.593 -10.077 -0.759 12.640 Atomic orbital electron populations 1.70026 1.07077 1.27331 1.35070 1.25723 0.94669 1.00373 0.92567 0.86267 0.80440 0.81512 0.78255 1.18770 1.20080 1.20093 1.20870 0.93657 0.89035 1.54265 0.91273 1.18264 0.87230 0.82002 0.76367 1.90612 1.13949 1.86466 1.54983 1.46176 1.08697 1.03715 1.83260 1.19123 0.89478 0.78667 1.03281 1.26318 1.00703 1.00628 0.82790 1.71942 1.10878 1.07864 1.30087 1.30505 0.98098 0.98426 0.82433 1.85313 1.47115 1.40523 1.25507 1.74721 1.06916 1.02238 1.23978 0.92030 0.78688 0.89944 0.90413 0.72319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.09 11.83 55.55 0.66 -22.43 14 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 14 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 14 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 14 7 C -0.54 -15.50 9.54 -35.63 -0.34 -15.84 14 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 14 9 C 0.56 16.13 7.75 -12.99 -0.10 16.03 14 10 O -0.58 -18.84 15.02 5.20 0.08 -18.76 14 11 N -0.76 -17.86 5.54 -62.91 -0.35 -18.21 14 12 C 0.22 4.54 6.30 -5.20 -0.03 4.51 14 13 C 0.17 2.92 7.59 -156.37 -1.19 1.74 14 14 N -0.47 -7.13 11.55 -13.72 -0.16 -7.29 14 15 C 0.15 1.46 13.40 51.98 0.70 2.16 14 16 O 0.08 0.94 11.31 18.10 0.20 1.15 14 17 N -0.37 -6.09 12.16 30.87 0.38 -5.71 14 18 H 0.27 7.30 8.29 -40.82 -0.34 6.96 14 19 H 0.38 8.19 8.44 -40.82 -0.34 7.85 14 20 H 0.08 1.73 8.14 -51.93 -0.42 1.31 14 21 H 0.08 1.64 8.14 -51.93 -0.42 1.22 14 22 H 0.26 0.85 8.06 -52.48 -0.42 0.42 14 LS Contribution 217.28 15.07 3.27 3.27 Total: -1.00 -35.94 217.28 -3.16 -39.10 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -1.16 Total: 2.72 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.06 Total: 10.93 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.53 Total: -53.64 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.28 Total: -17.62 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -35.94 -3.16 -39.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231806733.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.518 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds