Wall clock time and date at job start Mon Mar 30 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86804 * 119.99590 * 2 1 4 4 H 1.48501 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47182 * 299.99543 * 3 2 1 6 6 H 1.48494 * 109.47457 * 59.99614 * 3 2 1 7 7 C 1.40047 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.46370 * 119.99938 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99989 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00134 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00480 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47474 * 180.02562 * 12 11 9 14 14 N 1.34497 * 126.28727 * 269.97418 * 13 12 11 15 15 C 1.31126 * 105.61473 * 180.02562 * 14 13 12 16 16 O 1.33644 * 106.89983 * 359.97438 * 15 14 13 17 17 N 1.21297 * 109.80913 * 0.02562 * 16 15 14 18 18 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 19 19 H 0.97004 * 119.99619 * 0.02562 * 11 9 7 20 20 H 1.08999 * 109.47056 * 60.00082 * 12 11 9 21 21 H 1.09003 * 109.46948 * 300.00480 * 12 11 9 22 22 H 1.08005 * 126.55289 * 180.26876 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0017 10 8 0.0584 -2.4805 0.0017 11 7 1.9491 -3.6476 0.0017 12 6 1.2167 -4.9164 0.0022 13 6 2.1960 -6.0618 0.0028 14 7 2.7129 -6.6676 -1.0811 15 6 3.5099 -7.6001 -0.6178 16 8 3.4534 -7.5321 0.7157 17 7 2.6961 -6.6457 1.0504 18 1 -0.4850 0.8400 -0.0004 19 1 2.9191 -3.6475 0.0013 20 1 0.5897 -4.9744 -0.8875 21 1 0.5903 -4.9739 0.8925 22 1 4.1028 -8.2882 -1.2021 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231806733.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:51 Heat of formation + Delta-G solvation = 1.137538 kcal Electronic energy + Delta-G solvation = -11773.614397 eV Core-core repulsion = 9331.107797 eV Total energy + Delta-G solvation = -2442.506601 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.71710 -39.56420 -37.20198 -35.25157 -34.51491 -33.20891 -29.62854 -27.50218 -25.14965 -23.46739 -21.89962 -19.74601 -19.13949 -18.66016 -17.52947 -16.87565 -16.38968 -16.00300 -15.34065 -14.62312 -14.15748 -13.69135 -13.37139 -13.18742 -12.80184 -12.76750 -12.68226 -12.13611 -11.99340 -11.28258 -10.98025 -9.97920 -9.70711 -8.34699 -6.92335 0.23351 1.11701 1.39980 1.40225 1.58748 2.18304 2.24132 2.40331 2.60775 3.09440 3.12733 3.55253 4.04422 4.39362 4.51894 4.77134 5.04291 5.27887 5.76496 5.94756 6.15859 6.81001 7.19929 7.35531 8.37000 8.60557 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.078114 B = 0.007544 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.364108 B = 3710.851552 C = 3901.399880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.027 3.973 3 Si 1.003 2.997 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.540 3.460 10 O -0.626 6.626 11 N -0.749 5.749 12 C 0.226 3.774 13 C 0.147 3.853 14 N -0.511 5.511 15 C 0.188 3.812 16 O 0.093 5.907 17 N -0.390 5.390 18 H 0.277 0.723 19 H 0.393 0.607 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -11.561 -1.416 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.606 4.606 8 H 0.106 0.894 9 C 0.345 3.655 10 O -0.513 6.513 11 N -0.405 5.405 12 C 0.100 3.900 13 C -0.125 4.125 14 N -0.244 5.244 15 C -0.051 4.051 16 O 0.028 5.972 17 N -0.095 5.095 18 H 0.087 0.913 19 H 0.226 0.774 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.343 0.657 Dipole moment (debyes) X Y Z Total from point charges 8.975 -10.997 -0.916 14.224 hybrid contribution 0.453 0.381 -0.124 0.605 sum 9.428 -10.616 -1.040 14.236 Atomic orbital electron populations 1.70179 1.09555 1.29203 1.35891 1.27030 0.95619 1.05055 0.91088 0.84893 0.79185 0.75005 0.78705 1.17098 1.19072 1.19154 1.21404 0.94744 0.89706 1.54736 0.89435 1.18648 0.86899 0.83779 0.76142 1.90563 1.15916 1.87587 1.57264 1.45796 1.09147 1.03792 1.81801 1.18860 0.90171 0.78870 1.02054 1.25614 1.01751 1.00943 0.84164 1.71888 1.12834 1.09791 1.29839 1.31835 0.95491 0.96609 0.81208 1.85280 1.45858 1.39119 1.26910 1.74715 1.07478 1.02983 1.24279 0.91285 0.77430 0.91112 0.91801 0.65735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.49 11.83 21.84 0.26 -50.23 14 2 C 0.03 1.55 5.50 85.30 0.47 2.02 14 3 Si 1.00 41.15 29.56 68.60 2.03 43.18 14 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 14 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 14 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 14 7 C -0.57 -32.93 9.54 24.83 0.24 -32.70 14 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 14 9 C 0.54 32.33 7.75 86.36 0.67 33.00 14 10 O -0.63 -42.76 15.02 -4.31 -0.06 -42.83 14 11 N -0.75 -36.09 5.54 -471.16 -2.61 -38.70 14 12 C 0.23 9.67 6.30 85.63 0.54 10.21 14 13 C 0.15 5.06 7.59 138.46 1.05 6.11 14 14 N -0.51 -14.38 11.55 -315.38 -3.64 -18.03 14 15 C 0.19 2.96 13.40 130.52 1.75 4.71 14 16 O 0.09 2.03 11.31 74.83 0.85 2.87 14 17 N -0.39 -12.29 12.16 -60.40 -0.73 -13.02 14 18 H 0.28 15.33 8.29 -92.71 -0.77 14.56 14 19 H 0.39 16.98 8.44 -92.71 -0.78 16.20 14 20 H 0.07 3.14 8.14 -2.39 -0.02 3.12 14 21 H 0.06 2.86 8.14 -2.39 -0.02 2.84 14 22 H 0.33 -0.06 8.06 -2.91 -0.02 -0.08 14 Total: -1.00 -81.73 217.28 1.28 -80.46 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.48 Total: 12.94 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 4.71 Total: 23.35 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.73 Total: -119.98 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: 0.78 Total: -39.95 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -81.73 1.28 -80.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231806733.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.593 kcal (2) G-P(sol) polarization free energy of solvation -81.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds