Wall clock time and date at job start Mon Mar 30 2020 20:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35818 * 117.00075 * 2 1 4 4 C 1.39317 * 120.76787 * 359.97397 * 3 2 1 5 5 C 1.38628 * 119.53997 * 180.02562 * 4 3 2 6 6 N 1.31459 * 121.15866 * 359.72183 * 5 4 3 7 7 C 1.33734 * 121.66537 * 0.56909 * 6 5 4 8 8 C 1.41274 * 119.83793 * 179.70668 * 7 6 5 9 9 H 1.08002 * 120.00431 * 179.73385 * 8 7 6 10 10 C 1.40028 * 119.99670 * 359.45207 * 8 7 6 11 11 N 1.30754 * 120.00266 * 0.27857 * 10 8 7 12 12 Si 1.86803 * 119.99845 * 180.27293 * 10 8 7 13 13 H 1.48504 * 109.47118 * 60.00518 * 12 10 8 14 14 H 1.48504 * 109.47036 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47374 * 300.00624 * 12 10 8 16 16 C 1.39140 * 120.77301 * 180.02562 * 3 2 1 17 17 F 1.35105 * 120.57620 * 359.97438 * 16 3 2 18 18 H 1.09001 * 109.47315 * 300.00565 * 1 2 3 19 19 H 1.09004 * 109.47043 * 59.99994 * 1 2 3 20 20 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.23180 * 0.04671 * 4 3 2 22 22 H 1.07995 * 119.42200 * 180.02562 * 5 4 3 23 23 H 0.96996 * 120.00379 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.3026 2.3886 -0.0005 5 6 1.9583 3.6100 -0.0011 6 7 3.2711 3.6772 0.0044 7 6 4.0305 2.5764 -0.0006 8 6 5.4383 2.6936 -0.0007 9 1 6.0542 1.8064 -0.0004 10 6 6.0354 3.9602 -0.0071 11 7 5.2899 5.0344 -0.0076 12 14 7.8969 4.1152 -0.0150 13 1 8.4436 3.4549 -1.2276 14 1 8.2740 5.5516 -0.0205 15 1 8.4532 3.4625 1.1973 16 6 3.4340 1.3017 -0.0005 17 9 4.1963 0.1862 -0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 0.2233 2.3509 -0.0002 22 1 1.3804 4.5224 -0.0011 23 1 5.7035 5.9118 -0.0117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238383835.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:01 Heat of formation + Delta-G solvation = -54.569234 kcal Electronic energy + Delta-G solvation = -12135.544352 eV Core-core repulsion = 9670.702163 eV Total energy + Delta-G solvation = -2464.842189 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.11943 -38.89411 -36.98812 -33.63655 -29.89418 -29.66164 -27.11078 -25.48736 -21.75125 -21.30878 -18.12636 -16.52929 -16.10990 -15.52566 -15.20423 -15.00882 -13.91628 -13.83696 -13.25750 -12.80994 -12.25912 -11.84907 -11.84304 -11.27731 -11.08129 -10.88091 -10.75196 -10.52965 -9.93905 -9.41614 -7.83598 -7.80713 -7.40699 -6.58536 -4.68114 2.55155 2.80886 3.03518 3.06850 3.12978 3.84130 4.00936 4.59389 5.51332 5.56328 5.67584 5.67892 5.81035 6.01496 6.24913 6.38000 6.93807 7.09432 7.23833 7.29700 7.41824 8.09192 8.18266 8.53127 8.73127 9.89618 10.13614 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.061896 B = 0.011390 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.266196 B = 2457.744064 C = 2894.859515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.147 3.853 4 C -0.380 4.380 5 C 0.149 3.851 6 N -0.483 5.483 7 C 0.254 3.746 8 C -0.409 4.409 9 H 0.092 0.908 10 C 0.066 3.934 11 N -0.704 5.704 12 Si 0.916 3.084 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.262 1.262 16 C -0.109 4.109 17 F -0.154 7.154 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.087 0.913 21 H 0.108 0.892 22 H 0.128 0.872 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -1.882 -0.019 4.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.235 6.235 3 C 0.096 3.904 4 C -0.404 4.404 5 C -0.018 4.018 6 N -0.197 5.197 7 C 0.130 3.870 8 C -0.439 4.439 9 H 0.110 0.890 10 C -0.161 4.161 11 N -0.324 5.324 12 Si 0.739 3.261 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.186 1.186 16 C -0.133 4.133 17 F -0.134 7.134 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.106 0.894 21 H 0.126 0.874 22 H 0.146 0.854 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.081 -1.096 -0.013 3.270 hybrid contribution -0.002 -0.769 -0.010 0.769 sum -3.083 -1.865 -0.023 3.603 Atomic orbital electron populations 1.22844 0.79794 1.02344 1.01015 1.86003 1.20360 1.27843 1.89334 1.19074 0.90671 0.84197 0.96419 1.21278 0.98678 0.92720 1.27746 1.22402 0.92043 0.94966 0.92426 1.68855 1.03437 1.28474 1.18946 1.18520 0.94356 0.84151 0.89988 1.19656 0.90097 0.93885 1.40282 0.88996 1.26129 1.01060 0.95363 0.93505 1.70122 1.37107 0.98723 1.26466 0.86239 0.81384 0.78198 0.80265 1.18625 1.19967 1.18626 1.18157 0.84884 0.84179 1.26050 1.91253 1.75591 1.50759 1.95761 0.93219 0.93225 0.89427 0.87378 0.85429 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.84 101.05 0.99 1.55 14 2 O -0.32 -7.06 10.42 -19.17 -0.20 -7.26 14 3 C 0.15 3.61 6.73 -38.85 -0.26 3.35 14 4 C -0.38 -8.55 9.12 -39.04 -0.36 -8.90 14 5 C 0.15 3.56 11.17 -17.57 -0.20 3.36 14 6 N -0.48 -13.29 7.86 -11.13 -0.09 -13.38 14 7 C 0.25 7.20 6.56 -84.94 -0.56 6.65 14 8 C -0.41 -11.23 8.99 -37.76 -0.34 -11.57 14 9 H 0.09 2.43 7.42 -52.49 -0.39 2.04 14 10 C 0.07 1.68 5.50 -17.34 -0.10 1.58 14 11 N -0.70 -18.32 11.46 55.55 0.64 -17.69 14 12 Si 0.92 18.41 29.56 -169.99 -5.02 13.39 14 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 14 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 15 H -0.26 -5.21 7.11 56.52 0.40 -4.81 14 16 C -0.11 -2.97 7.35 -38.30 -0.28 -3.25 14 17 F -0.15 -4.18 16.46 2.25 0.04 -4.14 14 18 H 0.05 0.72 7.70 -51.93 -0.40 0.32 14 19 H 0.05 0.72 7.70 -51.93 -0.40 0.32 14 20 H 0.09 1.07 8.14 -51.93 -0.42 0.65 14 21 H 0.11 2.05 6.44 -52.49 -0.34 1.71 14 22 H 0.13 2.60 8.06 -52.49 -0.42 2.18 14 23 H 0.28 6.47 8.29 -40.82 -0.34 6.13 14 LS Contribution 216.09 15.07 3.26 3.26 Total: -1.00 -30.23 216.09 -3.98 -34.21 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -1.51 Total: -1.17 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.09 Total: -7.23 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.55 Total: -31.07 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -30.23 -3.98 -34.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238383835.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.355 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds