Wall clock time and date at job start Mon Mar 30 2020 20:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35685 * 117.00539 * 2 1 4 4 C 1.39595 * 120.26070 * 0.02562 * 3 2 1 5 5 N 1.31269 * 120.96991 * 180.02562 * 4 3 2 6 6 C 1.33712 * 121.58959 * 359.97438 * 5 4 3 7 7 C 1.41043 * 119.78196 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99922 * 180.02562 * 7 6 5 9 9 C 1.40002 * 120.00273 * 0.02562 * 7 6 5 10 10 N 1.30801 * 119.99800 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00127 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46934 * 59.99918 * 11 9 7 13 13 H 1.48497 * 109.47361 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47097 * 300.00168 * 11 9 7 15 15 C 1.41068 * 120.43260 * 359.97438 * 6 5 4 16 16 F 1.35107 * 120.49610 * 180.02562 * 15 6 5 17 17 C 1.38203 * 119.00789 * 0.02562 * 15 6 5 18 18 H 1.08998 * 109.46943 * 300.00015 * 1 2 3 19 19 H 1.09002 * 109.47222 * 59.99247 * 1 2 3 20 20 H 1.09001 * 109.47737 * 179.97438 * 1 2 3 21 21 H 1.07993 * 119.51774 * 359.73952 * 4 3 2 22 22 H 0.96998 * 119.99578 * 179.97438 * 10 9 7 23 23 H 1.08000 * 120.73708 * 180.02562 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2902 2.3832 0.0005 5 7 1.8718 3.5600 0.0000 6 6 3.2032 3.6834 -0.0005 7 6 3.7878 4.9669 -0.0016 8 1 4.8629 5.0706 -0.0024 9 6 2.9747 6.1066 -0.0015 10 7 1.6727 5.9810 0.0000 11 14 3.7490 7.8065 -0.0037 12 1 4.5899 7.9658 -1.2172 13 1 2.6802 8.8374 -0.0026 14 1 4.5926 7.9677 1.2078 15 6 4.0269 2.5382 0.0000 16 9 5.3724 2.6613 0.0000 17 6 3.4370 1.2883 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5140 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 0.2120 2.3226 -0.0033 22 1 1.1093 6.7706 0.0004 23 1 4.0409 0.3929 0.0013 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238403917.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:06 Heat of formation + Delta-G solvation = -52.638724 kcal Electronic energy + Delta-G solvation = -12058.236451 eV Core-core repulsion = 9593.477974 eV Total energy + Delta-G solvation = -2464.758476 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.38446 -38.92920 -36.74100 -33.53488 -30.58704 -29.45504 -26.84257 -25.30076 -22.13731 -21.11394 -17.68670 -17.21750 -16.34714 -15.06707 -14.97972 -14.86987 -14.13473 -14.12985 -13.63921 -12.64414 -12.05947 -11.93657 -11.76699 -11.28901 -11.12074 -10.98777 -10.64353 -10.56300 -10.07133 -9.28955 -8.14842 -7.88616 -7.37958 -6.56119 -4.51872 2.47542 2.69380 3.04743 3.07981 3.12535 3.88887 4.17450 4.58598 5.56741 5.58909 5.69487 5.71234 5.89826 5.93621 6.02249 6.39653 6.63773 6.97260 7.08736 7.23033 7.67311 8.07699 8.26251 8.52448 8.74045 9.79571 10.18239 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.049665 B = 0.011666 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.643624 B = 2399.661543 C = 2948.161805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C -0.064 4.064 4 C 0.058 3.942 5 N -0.440 5.440 6 C 0.217 3.783 7 C -0.420 4.420 8 H 0.090 0.910 9 C 0.067 3.933 10 N -0.715 5.715 11 Si 0.914 3.086 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.048 4.048 16 F -0.153 7.153 17 C -0.107 4.107 18 H 0.045 0.955 19 H 0.045 0.955 20 H 0.084 0.916 21 H 0.130 0.870 22 H 0.276 0.724 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -2.864 -0.004 3.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C -0.112 4.112 4 C -0.108 4.108 5 N -0.154 5.154 6 C 0.091 3.909 7 C -0.451 4.451 8 H 0.108 0.892 9 C -0.159 4.159 10 N -0.337 5.337 11 Si 0.738 3.262 12 H -0.187 1.187 13 H -0.201 1.201 14 H -0.187 1.187 15 C -0.073 4.073 16 F -0.132 7.132 17 C -0.133 4.133 18 H 0.064 0.936 19 H 0.063 0.937 20 H 0.102 0.898 21 H 0.148 0.852 22 H 0.087 0.913 23 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.419 -2.150 -0.005 3.236 hybrid contribution 0.713 0.020 0.000 0.713 sum -1.706 -2.130 -0.005 2.729 Atomic orbital electron populations 1.22745 0.80429 1.02031 1.00646 1.85777 1.19475 1.27752 1.91418 1.19359 0.91668 0.84704 1.15462 1.22940 0.99109 0.88250 1.00521 1.68780 1.09413 1.21551 1.15608 1.18647 0.87535 0.91860 0.92852 1.19516 0.94903 0.89029 1.41651 0.89173 1.26072 0.94707 1.01535 0.93544 1.70120 1.04306 1.31257 1.28005 0.86270 0.79634 0.80189 0.80138 1.18739 1.20091 1.18744 1.18417 0.77096 0.94132 1.17614 1.91289 1.30023 1.96780 1.95149 1.20108 0.92217 0.96122 1.04832 0.93647 0.93658 0.89768 0.85225 0.91272 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 14 2 O -0.33 -6.69 10.49 -18.76 -0.20 -6.89 14 3 C -0.06 -1.49 6.73 -38.64 -0.26 -1.75 14 4 C 0.06 1.38 10.21 -17.29 -0.18 1.20 14 5 N -0.44 -12.08 7.84 -10.91 -0.09 -12.16 14 6 C 0.22 6.05 6.56 -84.91 -0.56 5.49 14 7 C -0.42 -11.42 8.98 -37.86 -0.34 -11.76 14 8 H 0.09 2.34 7.41 -52.48 -0.39 1.96 14 9 C 0.07 1.70 5.50 -17.33 -0.10 1.60 14 10 N -0.72 -18.73 11.45 55.55 0.64 -18.10 14 11 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 14 12 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 13 H -0.28 -5.39 7.11 56.52 0.40 -4.98 14 14 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 15 C -0.05 -1.25 7.33 -38.52 -0.28 -1.53 14 16 F -0.15 -3.83 16.56 2.25 0.04 -3.80 14 17 C -0.11 -2.56 10.09 -39.15 -0.40 -2.95 14 18 H 0.04 0.66 7.67 -51.93 -0.40 0.26 14 19 H 0.04 0.66 7.66 -51.93 -0.40 0.26 14 20 H 0.08 1.00 8.14 -51.93 -0.42 0.57 14 21 H 0.13 2.71 6.30 -52.49 -0.33 2.38 14 22 H 0.28 6.51 8.30 -40.82 -0.34 6.17 14 23 H 0.12 2.50 8.06 -52.49 -0.42 2.08 14 LS Contribution 215.98 15.07 3.25 3.25 Total: -1.00 -29.39 215.98 -3.99 -33.38 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -1.50 Total: -1.03 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.11 Total: -8.14 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.55 Total: -30.26 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.89 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.39 -3.99 -33.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238403917.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.259 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds