Wall clock time and date at job start Mon Mar 30 2020 20:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48508 * 109.46969 * 270.00235 * 3 2 1 5 5 H 1.48496 * 109.47205 * 29.99658 * 3 2 1 6 6 H 1.48497 * 109.47387 * 150.00479 * 3 2 1 7 7 C 1.37878 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99315 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00465 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.36701 * 299.99910 * 9 7 2 11 11 C 1.53155 * 109.36944 * 180.25320 * 9 7 2 12 12 C 1.54018 * 108.50148 * 185.93687 * 11 9 7 13 13 H 1.09002 * 113.03021 * 188.79100 * 12 11 9 14 14 C 1.54993 * 107.05511 * 314.12030 * 12 11 9 15 15 C 1.54057 * 104.76426 * 87.42441 * 14 12 11 16 16 N 1.48230 * 106.69826 * 358.98611 * 15 14 12 17 17 C 1.48799 * 105.17965 * 27.48495 * 16 15 14 18 18 C 1.47682 * 108.91178 * 271.82930 * 16 15 14 19 19 H 0.96996 * 120.00120 * 359.97438 * 1 2 3 20 20 H 0.96705 * 113.99788 * 60.25245 * 10 9 7 21 21 H 1.09003 * 109.62984 * 305.64306 * 11 9 7 22 22 H 1.08998 * 109.63037 * 66.23730 * 11 9 7 23 23 H 1.08998 * 110.37878 * 206.24892 * 14 12 11 24 24 H 1.09000 * 110.37514 * 328.59847 * 14 12 11 25 25 H 1.09003 * 110.01127 * 118.29326 * 15 14 12 26 26 H 1.09001 * 110.01229 * 239.62978 * 15 14 12 27 27 H 1.09005 * 110.93614 * 199.10792 * 17 16 15 28 28 H 1.08996 * 110.93519 * 75.43535 * 17 16 15 29 29 H 1.08992 * 109.50177 * 287.14367 * 18 16 15 30 30 H 1.09007 * 109.49996 * 167.03130 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 8 0.4307 -2.5718 1.1696 11 6 2.2483 -3.6615 0.0085 12 6 1.4646 -4.9788 -0.1415 13 1 2.0846 -5.8631 0.0064 14 6 0.2621 -4.9060 0.8338 15 6 -0.8534 -4.2107 0.0303 16 7 -0.2858 -3.8962 -1.3024 17 6 0.7686 -4.9215 -1.5285 18 6 0.3667 -2.5726 -1.2446 19 1 -0.4850 0.8400 0.0004 20 1 -0.2266 -1.8653 1.2331 21 1 2.9437 -3.5522 -0.8238 22 1 2.7975 -3.6673 0.9500 23 1 -0.0498 -5.9083 1.1273 24 1 0.5215 -4.3156 1.7126 25 1 -1.7081 -4.8787 -0.0764 26 1 -1.1582 -3.2926 0.5328 27 1 1.4665 -4.5987 -2.3012 28 1 0.3269 -5.8850 -1.7826 29 1 -0.3942 -1.7936 -1.1974 30 1 0.9797 -2.4299 -2.1346 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:49 Heat of formation + Delta-G solvation = -26.425680 kcal Electronic energy + Delta-G solvation = -13830.838992 eV Core-core repulsion = 11626.510598 eV Total energy + Delta-G solvation = -2204.328394 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.01937 -34.82845 -32.24919 -31.08341 -30.09848 -27.46948 -25.03569 -23.37579 -20.96022 -19.85997 -18.56183 -17.07591 -15.21336 -15.17685 -14.48825 -13.68324 -13.46987 -12.79640 -12.71168 -12.35989 -12.00590 -11.59654 -11.03383 -11.00304 -10.65365 -10.32388 -10.28294 -10.16647 -10.07188 -9.69075 -9.48234 -9.03566 -8.73994 -8.38422 -7.08821 -6.18426 -4.29166 3.21405 3.29066 3.32646 4.29688 4.98267 5.08475 5.46879 5.59374 5.80969 5.96598 6.14640 6.18485 6.33137 6.37815 6.42135 6.56199 6.73778 6.80740 6.83410 7.01657 7.06559 7.30233 7.53605 7.59358 7.73004 7.89205 8.03705 8.22697 8.73374 9.37252 9.48068 10.83725 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059929 B = 0.013600 C = 0.013135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.109301 B = 2058.312213 C = 2131.264143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.225 3.775 10 O -0.576 6.576 11 C -0.093 4.093 12 C -0.131 4.131 13 H 0.071 0.929 14 C -0.134 4.134 15 C 0.036 3.964 16 N -0.510 5.510 17 C 0.031 3.969 18 C 0.017 3.983 19 H 0.268 0.732 20 H 0.372 0.628 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.101 0.899 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -5.551 -0.436 5.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.076 0.924 9 C 0.185 3.815 10 O -0.387 6.387 11 C -0.131 4.131 12 C -0.151 4.151 13 H 0.089 0.911 14 C -0.172 4.172 15 C -0.092 4.092 16 N -0.231 5.231 17 C -0.098 4.098 18 C -0.111 4.111 19 H 0.078 0.922 20 H 0.224 0.776 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.157 -5.915 -0.794 5.970 hybrid contribution 0.915 1.455 0.452 1.777 sum 1.072 -4.460 -0.343 4.599 Atomic orbital electron populations 1.69574 1.05858 1.27420 1.51083 1.24998 0.94998 0.99422 0.93705 0.86466 0.79835 0.82771 0.78157 1.20554 1.21069 1.19929 1.21745 0.93654 0.91109 1.51010 0.92402 1.19132 0.87411 0.91769 0.83209 1.86332 1.52568 1.53224 1.46619 1.21825 0.97509 0.93229 1.00534 1.23126 0.97636 0.97931 0.96412 0.91108 1.23026 0.95089 0.98225 1.00857 1.23132 0.96114 1.00770 0.89174 1.66383 1.26050 1.03392 1.27284 1.23462 0.93815 0.96369 0.96195 1.23291 0.99353 0.90000 0.98430 0.92231 0.77621 0.92497 0.92738 0.94727 0.88058 0.93887 0.88810 0.91487 0.91805 0.87493 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 9.69 55.43 0.54 -23.08 16 2 C 0.07 1.84 5.21 -17.82 -0.09 1.75 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.29 8.23 -34.44 -0.28 -14.57 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.23 5.45 0.66 -91.70 -0.06 5.39 16 10 O -0.58 -14.04 7.07 -35.23 -0.25 -14.29 16 11 C -0.09 -2.02 4.61 -26.12 -0.12 -2.14 16 12 C -0.13 -2.49 4.35 -87.82 -0.38 -2.87 16 13 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -2.59 5.84 -25.13 -0.15 -2.74 16 15 C 0.04 0.74 6.15 -2.54 -0.02 0.73 16 16 N -0.51 -10.92 6.06 -228.99 -1.39 -12.31 16 17 C 0.03 0.58 6.41 -1.56 -0.01 0.57 16 18 C 0.02 0.41 4.69 -3.40 -0.02 0.40 16 19 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 20 H 0.37 9.46 6.48 45.56 0.30 9.76 16 21 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.10 2.16 5.65 -51.93 -0.29 1.86 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 2.06 5.32 -51.93 -0.28 1.79 16 27 H 0.07 1.24 7.70 -51.93 -0.40 0.84 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 2.80 6.17 -51.93 -0.32 2.48 16 30 H 0.05 1.28 7.87 -51.92 -0.41 0.87 16 LS Contribution 223.87 15.07 3.37 3.37 Total: -1.00 -26.11 223.87 -7.35 -33.46 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.48 Total: 10.71 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.13 Total: -13.49 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.85 Total: -35.39 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.25 Total: -14.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.11 -7.35 -33.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.036 kcal (2) G-P(sol) polarization free energy of solvation -26.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds