Wall clock time and date at job start Mon Mar 30 2020 20:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46789 * 2 1 4 4 C 1.52998 * 109.47346 * 240.00414 * 2 1 3 5 5 C 1.50696 * 109.47616 * 120.00129 * 2 1 3 6 6 N 1.27644 * 125.76639 * 0.02611 * 5 2 1 7 7 O 1.41380 * 113.17456 * 180.29969 * 6 5 2 8 8 C 1.44248 * 107.50550 * 342.63259 * 7 6 5 9 9 H 1.08999 * 111.04796 * 267.02793 * 8 7 6 10 10 C 1.50698 * 111.01499 * 143.17302 * 8 7 6 11 11 H 1.08005 * 119.99672 * 247.84372 * 10 8 7 12 12 C 1.37873 * 120.00295 * 67.83550 * 10 8 7 13 13 N 1.31521 * 119.99645 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00190 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46952 * 60.00408 * 14 12 10 16 16 H 1.48507 * 109.47039 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47295 * 300.00505 * 14 12 10 18 18 C 1.51678 * 125.77345 * 179.97438 * 5 2 1 19 19 H 1.09001 * 109.47004 * 299.99454 * 1 2 3 20 20 H 1.09004 * 109.47267 * 59.99778 * 1 2 3 21 21 H 1.09005 * 109.46712 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46746 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47551 * 299.99854 * 3 2 1 24 24 H 1.09001 * 109.46901 * 60.00483 * 3 2 1 25 25 H 1.09006 * 109.47244 * 300.00274 * 4 2 1 26 26 H 1.09004 * 109.47094 * 59.99702 * 4 2 1 27 27 H 1.09002 * 109.47641 * 179.97438 * 4 2 1 28 28 H 0.97001 * 119.99663 * 179.97438 * 13 12 10 29 29 H 1.09004 * 110.80662 * 313.54961 * 18 5 2 30 30 H 1.09003 * 110.80759 * 77.05267 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.3047 -1.2352 2.1383 7 8 2.0553 -1.8282 3.1793 8 6 3.4003 -2.0150 2.6925 9 1 3.5267 -3.0089 2.2633 10 6 4.4093 -1.7689 3.7843 11 1 5.0684 -0.9151 3.7280 12 6 4.4911 -2.6334 4.8552 13 7 3.6887 -3.6732 4.9235 14 14 5.7414 -2.3278 6.2089 15 1 5.4811 -1.0062 6.8340 16 1 5.6280 -3.3933 7.2373 17 1 7.1095 -2.3415 5.6316 18 6 3.4883 -0.9237 1.5987 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2494 26 1 1.6767 -0.2073 -2.1392 27 1 3.1301 -0.7208 -1.2495 28 1 3.7465 -4.2817 5.6768 29 1 4.0566 -1.2810 0.7399 30 1 3.9244 -0.0086 1.9994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261308970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:54 Heat of formation + Delta-G solvation = -3.453496 kcal Electronic energy + Delta-G solvation = -12746.866880 eV Core-core repulsion = 10543.534635 eV Total energy + Delta-G solvation = -2203.332245 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.09474 -36.25483 -32.83417 -30.59654 -29.65687 -27.13964 -27.10492 -25.02547 -21.84781 -20.92427 -17.77896 -16.68085 -15.41396 -14.64617 -14.57853 -14.12952 -13.71386 -13.58776 -12.75606 -12.31948 -12.07246 -11.84400 -11.59225 -11.43239 -11.25159 -11.01507 -10.82895 -10.73135 -10.67810 -10.61625 -9.78886 -9.58325 -9.31246 -8.65814 -7.96300 -6.14667 -4.30039 2.85331 3.26852 3.31657 3.33823 4.26190 4.33039 4.83272 5.05715 5.13826 5.29513 5.36746 5.72021 5.74916 5.89864 5.92881 6.03110 6.05132 6.07537 6.14349 6.20176 6.22682 6.46891 6.49968 6.71492 7.07749 7.39441 7.74967 8.04350 8.65555 8.89155 9.41932 10.93336 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067094 B = 0.008933 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.225857 B = 3133.524497 C = 3273.878017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.004 3.996 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.055 3.945 6 N -0.316 5.316 7 O -0.182 6.182 8 C 0.177 3.823 9 H 0.045 0.955 10 C -0.535 4.535 11 H 0.067 0.933 12 C 0.076 3.924 13 N -0.864 5.864 14 Si 0.902 3.098 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.140 4.140 19 H 0.060 0.940 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.073 0.927 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 6.931 -10.331 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.138 4.138 6 N -0.053 5.053 7 O -0.205 6.205 8 C 0.121 3.879 9 H 0.062 0.938 10 C -0.574 4.574 11 H 0.085 0.915 12 C -0.131 4.131 13 N -0.500 5.500 14 Si 0.728 3.272 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.180 4.180 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.759 6.489 -9.661 11.961 hybrid contribution 1.594 0.114 0.606 1.709 sum -1.165 6.603 -9.055 11.267 Atomic orbital electron populations 1.21771 0.93436 1.02518 1.01521 1.19084 0.95971 0.94471 0.90148 1.21828 1.01518 0.94220 1.01909 1.21850 1.01517 1.00445 0.95755 1.25805 0.94798 0.97059 0.96172 1.77381 1.23929 1.05904 0.98125 1.91456 1.23539 1.77247 1.28261 1.21233 0.81797 0.93036 0.91802 0.93766 1.20934 1.17284 1.11947 1.07198 0.91482 1.25133 0.95406 0.94390 0.98132 1.70014 1.36239 1.13109 1.30604 0.86516 0.81259 0.78223 0.81195 1.19877 1.20927 1.19882 1.23142 0.93289 1.01775 0.99751 0.92127 0.92663 0.92186 0.92102 0.92066 0.92347 0.92361 0.92036 0.92081 0.92369 0.90818 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.94 37.16 0.30 -1.58 16 2 C 0.00 0.06 0.97 -155.66 -0.15 -0.09 16 3 C -0.14 -1.71 8.40 37.16 0.31 -1.40 16 4 C -0.14 -1.71 8.38 37.16 0.31 -1.40 16 5 C 0.06 1.11 5.77 -78.58 -0.45 0.66 16 6 N -0.32 -7.66 11.71 35.65 0.42 -7.24 16 7 O -0.18 -5.29 12.14 -11.36 -0.14 -5.43 16 8 C 0.18 4.81 3.54 -26.96 -0.10 4.72 16 9 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.54 -15.26 8.82 -34.44 -0.30 -15.57 16 11 H 0.07 1.82 7.61 -52.48 -0.40 1.42 16 12 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 13 N -0.86 -26.14 13.21 55.43 0.73 -25.40 16 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.14 -3.00 6.37 -26.48 -0.17 -3.17 16 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.74 7.61 -51.93 -0.40 0.34 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16 30 H 0.08 1.75 7.77 -51.93 -0.40 1.34 16 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -32.01 255.74 -5.04 -37.04 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.53 Total: -3.50 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.35 Total: -15.73 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 1.15 Total: -32.64 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.14 Total: -5.43 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.01 -5.04 -37.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261308970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.590 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds