Wall clock time and date at job start Mon Mar 30 2020 20:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.50706 * 109.46585 * 119.99577 * 2 1 3 5 5 N 1.27633 * 125.77521 * 354.97775 * 4 2 1 6 6 O 1.41379 * 113.17592 * 180.33355 * 5 4 2 7 7 C 1.44250 * 107.50483 * 342.62641 * 6 5 4 8 8 H 1.09006 * 111.01229 * 267.00384 * 7 6 5 9 9 C 1.52997 * 111.01238 * 143.17507 * 7 6 5 10 10 C 1.50706 * 109.47238 * 69.59741 * 9 7 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47288 * 59.99994 * 14 12 10 16 16 H 1.48503 * 109.47086 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46819 * 299.99648 * 14 12 10 18 18 C 1.51753 * 125.74979 * 174.94963 * 4 2 1 19 19 H 1.09005 * 109.47573 * 300.00654 * 1 2 3 20 20 H 1.09003 * 109.47165 * 59.99806 * 1 2 3 21 21 H 1.08999 * 109.47559 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47145 * 239.99509 * 2 1 3 23 23 H 1.08999 * 109.46871 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47131 * 299.99395 * 3 2 1 25 25 H 1.08994 * 109.47463 * 59.99704 * 3 2 1 26 26 H 1.09001 * 109.46832 * 309.60055 * 9 7 6 27 27 H 1.09000 * 109.47611 * 189.60352 * 9 7 6 28 28 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 29 29 H 1.08995 * 110.79831 * 77.02841 * 18 4 2 30 30 H 1.08995 * 110.84593 * 313.49859 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 1.3083 -1.1554 2.1829 6 8 2.0583 -1.7713 3.2110 7 6 3.3648 -2.0684 2.6765 8 1 3.4016 -3.0809 2.2744 9 6 4.4504 -1.8617 3.7346 10 6 4.3294 -2.9276 4.7932 11 1 3.5559 -3.6775 4.7184 12 6 5.2062 -2.9452 5.8570 13 7 6.1479 -2.0316 5.9483 14 14 5.0568 -4.2667 7.1688 15 1 5.2225 -5.6042 6.5452 16 1 6.1104 -4.0661 8.1959 17 1 3.7190 -4.1807 7.8078 18 6 3.4843 -1.0178 1.5463 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 4.3294 -0.8798 4.1922 27 1 5.4321 -1.9254 3.2653 28 1 6.7650 -2.0442 6.6966 29 1 4.0007 -0.1255 1.9002 30 1 3.9893 -1.4397 0.6774 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:56 Heat of formation + Delta-G solvation = -5.639175 kcal Electronic energy + Delta-G solvation = -12399.207468 eV Core-core repulsion = 10195.780445 eV Total energy + Delta-G solvation = -2203.427023 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.59258 -35.72423 -33.29067 -31.09856 -30.96246 -27.68137 -26.74423 -23.55325 -22.64892 -20.51644 -18.68330 -16.48308 -15.80352 -15.33764 -14.79137 -14.50872 -13.89494 -13.33919 -13.01197 -12.41911 -12.18468 -12.12411 -11.96861 -11.42366 -11.30041 -11.15742 -11.04679 -10.78431 -10.58837 -10.49842 -9.97334 -9.57866 -9.16848 -8.64909 -8.38818 -6.02065 -4.03668 2.31210 3.36240 3.39408 3.43911 3.72085 4.40475 4.49148 4.86327 4.98837 5.18450 5.31517 5.34043 5.39608 5.56127 5.58409 5.75443 5.78147 5.84520 6.07648 6.16296 6.22749 6.34288 6.52045 6.63223 7.45120 7.60296 7.94492 8.09634 8.35308 9.00175 9.59951 11.09526 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.077907 B = 0.007406 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.315998 B = 3779.660065 C = 3999.220368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.144 4.144 4 C 0.068 3.932 5 N -0.303 5.303 6 O -0.182 6.182 7 C 0.053 3.947 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.150 4.150 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.262 0.738 29 H 0.096 0.904 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 4.777 -12.654 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.126 4.126 5 N -0.042 5.042 6 O -0.203 6.203 7 C -0.005 4.005 8 H 0.090 0.910 9 C -0.009 4.009 10 C -0.554 4.554 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.190 4.190 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.915 4.655 -11.914 14.540 hybrid contribution 1.002 -0.721 0.526 1.342 sum -5.912 3.934 -11.388 13.421 Atomic orbital electron populations 1.21761 0.93641 1.02619 1.02087 1.19748 0.96607 0.95583 0.92364 1.21798 1.01657 0.94308 1.02426 1.26126 0.94233 0.95977 0.96297 1.77618 1.21580 1.07067 0.97903 1.91327 1.24584 1.76238 1.28112 1.24037 0.85826 0.96280 0.94337 0.90993 1.19250 0.91019 0.98495 0.92158 1.21094 1.14742 1.12478 1.07129 0.92336 1.24992 0.95209 0.96117 0.98060 1.69947 1.18025 1.34379 1.31388 0.86577 0.77798 0.81961 0.81244 1.20203 1.21268 1.20081 1.23252 0.94313 1.01350 1.00067 0.91875 0.92260 0.92203 0.88981 0.91951 0.91678 0.92137 0.95447 0.94712 0.92860 0.88546 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.67 37.16 0.32 -1.26 16 2 C -0.02 -0.27 3.37 -91.77 -0.31 -0.58 16 3 C -0.14 -1.41 9.17 37.16 0.34 -1.07 16 4 C 0.07 1.10 6.42 -78.54 -0.50 0.60 16 5 N -0.30 -6.10 11.71 35.66 0.42 -5.68 16 6 O -0.18 -4.40 12.15 -11.36 -0.14 -4.54 16 7 C 0.05 1.18 3.72 -25.80 -0.10 1.09 16 8 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 9 C 0.03 0.75 4.69 -27.88 -0.13 0.62 16 10 C -0.52 -15.08 9.02 -34.44 -0.31 -15.39 16 11 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 14 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C -0.15 -2.58 6.62 -26.43 -0.18 -2.75 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.10 1.64 7.91 -51.93 -0.41 1.22 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -32.18 258.66 -5.67 -37.85 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -4.60 Total: -5.16 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.96 Total: -17.18 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 1.15 Total: -32.11 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.14 Total: -4.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.18 -5.67 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.211 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds