Wall clock time and date at job start Mon Mar 30 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00157 * 2 1 4 4 H 1.08004 * 120.00225 * 200.37096 * 3 2 1 5 5 C 1.38814 * 120.00247 * 20.37475 * 3 2 1 6 6 N 1.31621 * 119.99518 * 14.98024 * 5 3 2 7 7 Si 1.86795 * 120.00219 * 194.98194 * 5 3 2 8 8 H 1.48500 * 109.47245 * 85.00285 * 7 5 3 9 9 H 1.48500 * 109.47243 * 205.00246 * 7 5 3 10 10 H 1.48503 * 109.47001 * 325.00226 * 7 5 3 11 11 C 1.46497 * 119.99801 * 180.02562 * 2 1 3 12 12 C 1.50705 * 109.47281 * 269.99894 * 11 2 1 13 13 C 1.34089 * 126.35931 * 89.97743 * 12 11 2 14 14 N 1.34733 * 107.78801 * 179.78377 * 13 12 11 15 15 C 1.31050 * 108.60421 * 0.42483 * 14 13 12 16 16 N 1.38160 * 125.71122 * 179.83933 * 15 14 13 17 17 O 1.34211 * 108.57441 * 359.57504 * 15 14 13 18 18 H 1.09005 * 109.47055 * 275.09725 * 1 2 3 19 19 H 1.09003 * 109.46560 * 35.08992 * 1 2 3 20 20 H 1.08993 * 109.47472 * 155.09381 * 1 2 3 21 21 H 0.97007 * 119.99427 * 179.97438 * 6 5 3 22 22 H 1.08997 * 109.47480 * 149.99773 * 11 2 1 23 23 H 1.09005 * 109.47168 * 29.99573 * 11 2 1 24 24 H 1.08002 * 126.10720 * 0.04398 * 13 12 11 25 25 H 0.96997 * 119.99865 * 179.69583 * 16 15 14 26 26 H 0.97000 * 119.99563 * 359.41113 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3256 5 6 1.5209 2.3505 0.4185 6 7 0.3878 2.2835 1.0849 7 14 2.2827 4.0126 0.0361 8 1 1.8684 4.4462 -1.3224 9 1 1.8227 5.0098 1.0357 10 1 3.7627 3.9031 0.0909 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 1.6458 -2.4738 2.1694 14 7 2.2327 -2.6326 3.3717 15 6 3.3650 -1.9729 3.3747 16 7 4.2496 -1.8940 4.4330 17 8 3.5242 -1.3916 2.1755 18 1 -0.3633 0.0913 1.0236 19 1 -0.3632 0.8409 -0.5908 20 1 -0.3634 -0.9320 -0.4327 21 1 -0.0515 3.0973 1.3777 22 1 3.1499 -1.1383 -0.5143 23 1 1.6083 -2.0282 -0.5147 24 1 0.6998 -2.8948 1.8624 25 1 5.0695 -1.3837 4.3427 26 1 4.0487 -2.3456 5.2676 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306384918.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:08 Heat of formation + Delta-G solvation = 55.957010 kcal Electronic energy + Delta-G solvation = -12484.658065 eV Core-core repulsion = 10180.361710 eV Total energy + Delta-G solvation = -2304.296356 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.26437 -35.75031 -34.42484 -33.55929 -31.57361 -28.82126 -26.02678 -25.04797 -21.83460 -21.56521 -20.17357 -17.42111 -16.80590 -16.26195 -15.88127 -15.05213 -14.44145 -13.60420 -13.48612 -13.25972 -12.39155 -11.77321 -11.19743 -11.08254 -10.88797 -10.74237 -10.45373 -10.10393 -10.04434 -9.89844 -9.66025 -8.61648 -7.22726 -6.87750 -5.79829 -3.24056 2.50388 2.92243 3.36226 3.41575 3.43267 3.59464 4.31308 4.46656 5.37961 5.59429 5.70845 5.89142 5.99023 6.28799 6.43059 6.69172 6.96021 6.99544 7.31885 7.47452 7.63941 7.68457 7.77214 8.29862 8.73371 9.14517 9.75865 10.22976 11.24548 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.011468 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.107743 B = 2440.912022 C = 2776.043915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.261 4.261 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.901 5.901 7 Si 0.909 3.091 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.224 3.776 12 C -0.051 4.051 13 C -0.043 4.043 14 N -0.543 5.543 15 C 0.422 3.578 16 N -0.816 5.816 17 O -0.218 6.218 18 H 0.032 0.968 19 H 0.048 0.952 20 H 0.004 0.996 21 H 0.254 0.746 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.170 0.830 25 H 0.410 0.590 26 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -6.869 1.661 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.545 5.545 7 Si 0.738 3.262 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.094 3.906 12 C -0.109 4.109 13 C -0.181 4.181 14 N -0.283 5.283 15 C 0.121 3.879 16 N -0.378 5.378 17 O -0.104 6.104 18 H 0.050 0.950 19 H 0.067 0.933 20 H 0.022 0.978 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.187 0.813 25 H 0.240 0.760 26 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.512 -7.000 2.045 8.575 hybrid contribution 0.767 1.485 -0.005 1.671 sum 5.279 -5.515 2.040 7.902 Atomic orbital electron populations 1.20902 0.81871 0.95999 0.99862 1.44344 1.02305 1.00381 1.83324 1.19291 0.97432 0.84552 1.37768 0.90889 1.25067 0.97797 0.98704 0.97925 1.70108 1.18642 1.27107 1.38629 0.86209 0.78720 0.83549 0.77689 1.21169 1.21685 1.20448 1.19668 0.97045 0.88993 0.84879 1.25562 0.86111 1.00536 0.98652 1.22503 1.01722 1.04243 0.89601 1.70612 1.06543 1.27308 1.23846 1.21567 0.90675 0.92541 0.83097 1.40481 1.23080 1.62184 1.12028 1.84441 1.43058 1.61012 1.21919 0.94989 0.93296 0.97768 0.93547 0.92055 0.90354 0.81253 0.76025 0.74437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 9.02 59.85 0.54 4.42 15 2 N -0.58 -14.80 2.91 -182.50 -0.53 -15.33 15 3 C -0.26 -7.26 9.68 -15.06 -0.15 -7.41 15 4 H 0.07 1.99 7.86 -52.48 -0.41 1.57 15 5 C 0.00 0.12 5.06 -17.43 -0.09 0.03 15 6 N -0.90 -26.63 10.67 55.49 0.59 -26.04 15 7 Si 0.91 22.00 29.58 -169.99 -5.03 16.98 15 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 C 0.22 4.68 6.25 -5.19 -0.03 4.65 15 12 C -0.05 -1.11 6.96 -35.77 -0.25 -1.36 15 13 C -0.04 -0.90 11.79 -17.74 -0.21 -1.10 15 14 N -0.54 -11.38 11.34 -14.45 -0.16 -11.54 15 15 C 0.42 8.26 9.58 -86.99 -0.83 7.43 15 16 N -0.82 -11.15 9.05 29.77 0.27 -10.88 15 17 O -0.22 -4.80 10.80 3.70 0.04 -4.76 15 18 H 0.03 0.87 7.40 -51.93 -0.38 0.48 15 19 H 0.05 1.27 7.21 -51.93 -0.37 0.90 15 20 H 0.00 0.08 7.83 -51.93 -0.41 -0.33 15 21 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 22 H 0.06 1.23 8.03 -51.93 -0.42 0.81 15 23 H 0.08 1.37 7.86 -51.93 -0.41 0.97 15 24 H 0.17 3.09 8.06 -52.49 -0.42 2.67 15 25 H 0.41 4.54 8.95 -40.82 -0.37 4.17 15 26 H 0.42 4.67 8.95 -40.82 -0.37 4.30 15 LS Contribution 234.49 15.07 3.53 3.53 Total: -1.00 -33.22 234.49 -5.00 -38.22 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.69 Total: 3.16 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.02 Total: 6.66 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.17 Total: -63.79 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.04 Total: -4.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -33.22 -5.00 -38.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306384918.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.179 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds