Wall clock time and date at job start Mon Mar 30 2020 20:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00079 * 2 1 4 4 H 1.48493 * 109.47111 * 270.00042 * 3 2 1 5 5 H 1.48505 * 109.46890 * 30.00068 * 3 2 1 6 6 H 1.48504 * 109.47129 * 149.99549 * 3 2 1 7 7 C 1.38815 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99387 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99616 * 179.97438 * 9 7 2 11 11 H 1.09000 * 115.55523 * 9.32886 * 10 9 7 12 12 C 1.53000 * 117.49895 * 223.62054 * 10 9 7 13 13 C 1.52999 * 60.00092 * 252.51157 * 12 10 9 14 14 H 1.09001 * 117.51636 * 107.48242 * 13 12 10 15 15 C 1.53004 * 117.49611 * 252.50904 * 13 12 10 16 16 H 1.09002 * 110.67368 * 130.13481 * 15 13 12 17 17 C 1.55227 * 110.64294 * 252.98747 * 15 13 12 18 18 C 1.54813 * 101.98357 * 155.43882 * 17 15 13 19 19 C 1.54098 * 104.30472 * 339.26359 * 18 17 15 20 20 O 1.43744 * 107.29564 * 357.90152 * 19 18 17 21 21 H 0.97003 * 120.00221 * 0.02562 * 1 2 3 22 22 H 0.96995 * 120.00851 * 359.97438 * 9 7 2 23 23 H 1.08994 * 117.50096 * 145.01988 * 12 10 9 24 24 H 1.09003 * 117.49956 * 0.02562 * 12 10 9 25 25 H 1.08999 * 110.89081 * 37.30614 * 17 15 13 26 26 H 1.09003 * 111.02102 * 273.63128 * 17 15 13 27 27 H 1.09002 * 110.48794 * 220.51904 * 18 17 15 28 28 H 1.09002 * 110.48657 * 98.00326 * 18 17 15 29 29 H 1.08999 * 109.88182 * 117.33024 * 19 18 17 30 30 H 1.09008 * 109.87958 * 238.32904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.1336 -3.5788 0.1599 12 6 1.5605 -4.7598 -0.9357 13 6 1.3462 -4.8836 0.5741 14 1 0.3329 -4.7467 0.9518 15 6 2.1984 -5.9072 1.3270 16 1 2.6636 -5.4520 2.2014 17 6 1.3414 -7.1328 1.7429 18 6 2.4110 -8.2447 1.8701 19 6 3.5980 -7.7285 1.0340 20 8 3.1999 -6.4743 0.4555 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 2.3086 -5.4076 -1.3926 24 1 0.6884 -4.5414 -1.5520 25 1 0.6142 -7.3791 0.9692 26 1 0.8466 -6.9578 2.6984 27 1 2.0361 -9.1832 1.4616 28 1 2.7054 -8.3736 2.9116 29 1 4.4671 -7.5817 1.6753 30 1 3.8355 -8.4438 0.2464 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:38 Heat of formation + Delta-G solvation = -15.945551 kcal Electronic energy + Delta-G solvation = -12363.599966 eV Core-core repulsion = 10159.726025 eV Total energy + Delta-G solvation = -2203.873941 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.35948 -36.43491 -33.12799 -31.95780 -30.05731 -28.34030 -23.84594 -23.29810 -21.32381 -20.27017 -19.72747 -17.30566 -16.27677 -15.79870 -14.97133 -14.78706 -13.78141 -13.75414 -13.33014 -12.64679 -11.99318 -11.78424 -11.53357 -11.27105 -11.00202 -10.90184 -10.85049 -10.51326 -10.29069 -10.17579 -9.86009 -9.59417 -9.08610 -8.66528 -6.85911 -5.81973 -3.09610 3.42944 3.47910 3.49974 4.05832 4.52604 4.64899 4.70447 4.86757 5.02984 5.22498 5.39836 5.54861 5.62768 5.67935 5.77110 5.83220 5.90268 5.99158 6.05344 6.19673 6.25225 6.35024 6.65590 6.90461 7.04012 7.20182 7.69371 8.36826 9.47320 10.04022 10.38534 11.40327 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076354 B = 0.006916 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.622814 B = 4047.632809 C = 4160.148530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.689 5.689 10 C 0.158 3.842 11 H 0.102 0.898 12 C -0.211 4.211 13 C -0.202 4.202 14 H 0.104 0.896 15 C 0.116 3.884 16 H 0.068 0.932 17 C -0.147 4.147 18 C -0.157 4.157 19 C 0.046 3.954 20 O -0.369 6.369 21 H 0.257 0.743 22 H 0.386 0.614 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 -14.430 3.429 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.323 5.323 10 C 0.044 3.956 11 H 0.120 0.880 12 C -0.252 4.252 13 C -0.224 4.224 14 H 0.122 0.878 15 C 0.058 3.942 16 H 0.086 0.914 17 C -0.185 4.185 18 C -0.195 4.195 19 C -0.031 4.031 20 O -0.288 6.288 21 H 0.067 0.933 22 H 0.220 0.780 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.269 -14.093 3.251 15.080 hybrid contribution -0.111 0.578 0.225 0.630 sum 4.158 -13.516 3.476 14.562 Atomic orbital electron populations 1.69670 1.05233 1.25965 1.57059 1.24806 0.95578 0.97957 1.02448 0.86112 0.78657 0.83342 0.77623 1.21528 1.21687 1.20567 1.19330 0.91296 0.83757 1.43337 0.90698 1.42055 1.05770 0.99427 1.85049 1.20989 0.94844 0.81652 0.98108 0.88023 1.23453 1.03932 1.06759 0.91061 1.22875 1.00450 1.02357 0.96722 0.87759 1.22553 0.87241 0.92567 0.91806 0.91376 1.23177 0.98284 0.94782 1.02256 1.22929 0.96367 0.99486 1.00669 1.23064 0.96379 0.86750 0.96897 1.88910 1.58402 1.33598 1.47896 0.93312 0.77971 0.89084 0.90103 0.90444 0.90498 0.90929 0.91069 0.92873 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -7.02 9.98 -15.06 -0.15 -7.17 16 8 H 0.08 2.06 7.82 -52.49 -0.41 1.65 16 9 N -0.69 -18.17 5.61 -53.42 -0.30 -18.47 16 10 C 0.16 3.46 6.31 -67.93 -0.43 3.03 16 11 H 0.10 2.23 8.12 -51.93 -0.42 1.80 16 12 C -0.21 -4.09 9.82 -26.73 -0.26 -4.35 16 13 C -0.20 -3.71 5.65 -90.62 -0.51 -4.22 16 14 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 15 C 0.12 1.80 3.70 -25.55 -0.09 1.70 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.15 -1.82 6.61 -24.60 -0.16 -1.99 16 18 C -0.16 -1.62 7.00 -25.20 -0.18 -1.79 16 19 C 0.05 0.55 7.70 37.73 0.29 0.84 16 20 O -0.37 -5.88 9.68 -35.23 -0.34 -6.22 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.39 10.68 8.02 -40.82 -0.33 10.35 16 23 H 0.09 1.70 7.10 -51.93 -0.37 1.33 16 24 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 25 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -30.43 254.08 -7.17 -37.60 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.46 Total: 7.87 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.59 Total: -14.39 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.42 Total: -46.17 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.34 Total: -6.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.43 -7.17 -37.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.657 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds