Wall clock time and date at job start Mon Mar 30 2020 20:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47312 * 2 1 4 4 C 1.50698 * 109.47542 * 120.00341 * 2 1 3 5 5 H 1.08001 * 120.00014 * 25.58214 * 4 2 1 6 6 C 1.37873 * 120.00389 * 205.57717 * 4 2 1 7 7 N 1.31513 * 119.99826 * 352.92402 * 6 4 2 8 8 Si 1.86797 * 120.00330 * 172.91691 * 6 4 2 9 9 H 1.48501 * 109.47513 * 270.00576 * 8 6 4 10 10 H 1.48504 * 109.46937 * 30.00675 * 8 6 4 11 11 H 1.48503 * 109.47075 * 150.00282 * 8 6 4 12 12 N 1.46912 * 109.46911 * 240.00377 * 2 1 3 13 13 C 1.46893 * 110.99650 * 84.99872 * 12 2 1 14 14 C 1.50704 * 109.46886 * 180.02562 * 13 12 2 15 15 N 1.33317 * 126.54599 * 269.68685 * 14 13 12 16 16 N 1.28999 * 107.34894 * 179.83372 * 15 14 13 17 17 N 1.28771 * 108.73187 * 0.43465 * 16 15 14 18 18 H 0.97004 * 125.45661 * 179.72688 * 17 16 15 19 19 N 1.28883 * 109.09823 * 359.72495 * 17 16 15 20 20 H 1.09004 * 109.47341 * 175.56109 * 1 2 3 21 21 H 1.09006 * 109.46820 * 295.55563 * 1 2 3 22 22 H 1.08998 * 109.47431 * 55.55779 * 1 2 3 23 23 H 0.97004 * 120.00306 * 354.55016 * 7 6 4 24 24 H 1.00894 * 110.99995 * 321.04451 * 12 2 1 25 25 H 1.09002 * 109.47610 * 299.99708 * 13 12 2 26 26 H 1.08999 * 109.47269 * 60.00358 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4170 -1.4554 1.7129 6 6 3.2775 -0.4095 1.7401 7 7 4.0828 0.3922 1.0781 8 14 3.8208 -1.1405 3.3710 9 1 3.4227 -0.2332 4.4772 10 1 3.1749 -2.4643 3.5598 11 1 5.2967 -1.3051 3.3726 12 7 2.0196 -0.6925 -1.1996 13 6 2.0823 0.2227 -2.3469 14 6 2.5871 -0.5216 -3.5561 15 7 3.8587 -0.6505 -3.9353 16 7 3.8688 -1.3595 -5.0130 17 7 2.6557 -1.6648 -5.3185 18 1 2.3842 -2.1901 -6.0875 19 7 1.8597 -1.1609 -4.4389 20 1 -0.3634 -1.0246 -0.0795 21 1 -0.3633 0.4434 0.9272 22 1 -0.3634 0.5812 -0.8475 23 1 3.8342 0.7088 0.1955 24 1 1.4495 -1.4978 -1.4102 25 1 1.0869 0.6164 -2.5525 26 1 2.7587 1.0462 -2.1182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379323273.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:51 Heat of formation + Delta-G solvation = 117.798741 kcal Electronic energy + Delta-G solvation = -12239.746579 eV Core-core repulsion = 9970.424633 eV Total energy + Delta-G solvation = -2269.321946 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.15681 -36.42614 -34.00806 -33.26789 -31.76594 -29.31115 -25.51255 -24.40079 -24.17826 -21.60101 -20.58848 -18.94257 -16.91386 -16.75033 -14.85411 -14.45005 -13.90764 -13.65735 -13.16223 -12.84624 -12.17822 -11.89795 -11.50924 -11.20131 -11.00977 -10.94399 -10.70633 -10.65040 -10.13793 -10.04646 -9.73258 -8.60625 -8.34276 -7.21528 -6.23874 -3.99726 1.38162 2.42573 2.54984 3.49741 3.54259 3.70025 4.24192 4.61133 4.66124 5.21911 5.73716 5.76348 5.87139 5.99995 6.15851 6.26339 6.35726 6.52230 6.64483 6.88849 7.08149 7.99364 8.35782 8.45118 8.53938 8.61486 8.98996 9.78646 11.15468 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.047561 B = 0.009171 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.572169 B = 3052.275130 C = 3406.958845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.191 3.809 3 H 0.044 0.956 4 C -0.585 4.585 5 H 0.047 0.953 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 1.068 2.932 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.286 1.286 12 N -0.667 5.667 13 C 0.145 3.855 14 C 0.197 3.803 15 N -0.258 5.258 16 N -0.065 5.065 17 N -0.241 5.241 18 H 0.469 0.531 19 N -0.311 5.311 20 H 0.040 0.960 21 H 0.053 0.947 22 H 0.024 0.976 23 H 0.278 0.722 24 H 0.321 0.679 25 H 0.044 0.956 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -2.177 -9.868 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.086 3.914 3 H 0.062 0.938 4 C -0.624 4.624 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.530 5.530 8 Si 0.897 3.103 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.212 1.212 12 N -0.300 5.300 13 C 0.013 3.987 14 C -0.086 4.086 15 N -0.131 5.131 16 N -0.060 5.060 17 N -0.085 5.085 18 H 0.321 0.679 19 N -0.164 5.164 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.090 0.910 24 H 0.139 0.861 25 H 0.062 0.938 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.643 -2.241 -8.958 9.605 hybrid contribution -2.725 -0.285 -1.690 3.219 sum -5.368 -2.526 -10.648 12.189 Atomic orbital electron populations 1.22422 1.00556 0.99692 0.99594 1.19470 0.88451 0.95664 0.87805 0.93841 1.21819 1.04333 1.26487 1.09742 0.93500 1.25750 0.92960 0.95254 1.03644 1.70656 1.37757 1.30212 1.14360 0.83574 0.76098 0.75664 0.74920 1.21588 1.21664 1.21169 1.61764 1.58425 1.08379 1.01403 1.20355 0.98727 0.94862 0.84773 1.26003 0.86353 0.98507 0.97774 1.75960 1.20115 1.12870 1.04196 1.78931 1.04776 1.11569 1.10746 1.47726 1.02862 1.36516 1.21428 0.67869 1.74688 1.23706 1.15336 1.02674 0.94092 0.92812 0.95702 0.91029 0.86146 0.93791 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.15 37.15 0.34 -2.99 15 2 C 0.19 4.62 2.05 -68.86 -0.14 4.48 15 3 H 0.04 1.12 6.81 -51.93 -0.35 0.77 15 4 C -0.58 -16.14 8.64 -34.44 -0.30 -16.43 15 5 H 0.05 1.30 7.82 -52.49 -0.41 0.89 15 6 C 0.03 0.91 5.45 -17.82 -0.10 0.81 15 7 N -0.90 -27.02 13.56 55.43 0.75 -26.26 15 8 Si 1.07 25.35 29.91 -169.99 -5.08 20.26 15 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 12 N -0.67 -14.97 6.16 -109.22 -0.67 -15.64 15 13 C 0.15 2.79 6.11 -4.98 -0.03 2.76 15 14 C 0.20 3.63 7.88 -156.63 -1.23 2.40 15 15 N -0.26 -5.02 12.50 32.45 0.41 -4.62 15 16 N -0.06 -1.04 13.48 60.35 0.81 -0.23 15 17 N -0.24 -3.08 7.91 60.34 0.48 -2.60 15 18 H 0.47 3.40 8.96 -340.53 -3.05 0.35 15 19 N -0.31 -4.90 12.36 32.47 0.40 -4.50 15 20 H 0.04 0.80 8.05 -51.93 -0.42 0.39 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.02 0.44 7.57 -51.93 -0.39 0.05 15 23 H 0.28 8.36 6.94 -40.82 -0.28 8.07 15 24 H 0.32 6.93 8.41 -39.29 -0.33 6.60 15 25 H 0.04 0.76 7.52 -51.93 -0.39 0.37 15 26 H 0.10 1.94 8.06 -51.93 -0.42 1.52 15 LS Contribution 234.75 15.07 3.54 3.54 Total: -1.00 -32.09 234.75 -6.10 -38.19 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.27 Total: 0.84 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.46 Total: -8.98 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 2.18 Total: -53.85 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.09 -6.10 -38.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323273.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.991 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds