Wall clock time and date at job start Mon Mar 30 2020 20:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00036 * 2 1 4 4 H 1.48501 * 109.46729 * 269.99602 * 3 2 1 5 5 H 1.48498 * 109.46926 * 29.99632 * 3 2 1 6 6 H 1.48503 * 109.46966 * 149.99695 * 3 2 1 7 7 C 1.37881 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00253 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46974 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46943 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.47173 * 174.73178 * 11 10 9 13 13 C 1.48623 * 111.00100 * 57.91565 * 12 11 10 14 14 C 1.54915 * 102.81743 * 158.56081 * 13 12 11 15 15 C 1.52177 * 103.16033 * 322.89923 * 14 13 12 16 16 O 1.20761 * 127.08328 * 202.08803 * 15 14 13 17 17 C 1.47891 * 111.00140 * 174.72641 * 12 11 10 18 18 H 0.96998 * 120.00223 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.46509 * 60.00523 * 9 7 2 20 20 H 1.08999 * 109.46905 * 300.00551 * 9 7 2 21 21 H 1.08997 * 109.47669 * 59.99953 * 10 9 7 22 22 H 1.09007 * 109.47041 * 299.99996 * 10 9 7 23 23 H 1.09004 * 109.47289 * 54.73476 * 11 10 9 24 24 H 1.08996 * 109.47154 * 294.73136 * 11 10 9 25 25 H 1.09007 * 110.74320 * 276.89572 * 13 12 11 26 26 H 1.09005 * 110.74188 * 40.22443 * 13 12 11 27 27 H 1.09001 * 110.67868 * 204.47679 * 14 13 12 28 28 H 1.09002 * 110.82200 * 81.38117 * 14 13 12 29 29 H 1.09004 * 109.86897 * 334.37047 * 17 12 11 30 30 H 1.09007 * 109.87005 * 95.33768 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0022 12 7 6.0412 -4.0157 0.1293 13 6 5.5248 -4.8679 -0.9734 14 6 6.5362 -6.0410 -1.0036 15 6 7.8638 -5.3617 -0.7007 16 8 8.9683 -5.7694 -0.9694 17 6 7.5141 -4.0685 0.0079 18 1 -0.4850 0.8400 -0.0004 19 1 3.8744 -0.6801 0.8912 20 1 3.8752 -0.6803 -0.8888 21 1 3.6586 -3.1502 -0.8892 22 1 3.6579 -3.1506 0.8908 23 1 5.9142 -2.0434 0.8418 24 1 5.9156 -2.2062 -0.9307 25 1 4.5218 -5.2287 -0.7453 26 1 5.5351 -4.3247 -1.9184 27 1 6.5575 -6.5056 -1.9894 28 1 6.2974 -6.7783 -0.2371 29 1 7.8685 -3.2188 -0.5757 30 1 7.9684 -4.0523 0.9987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396499952.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:01 Heat of formation + Delta-G solvation = -63.360158 kcal Electronic energy + Delta-G solvation = -12162.578398 eV Core-core repulsion = 9956.648405 eV Total energy + Delta-G solvation = -2205.929993 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.98138 -38.69429 -35.87929 -33.99659 -31.58125 -29.61511 -27.48769 -24.57422 -22.69244 -21.51151 -20.65006 -18.88946 -17.36517 -17.17269 -16.31976 -16.06097 -15.91679 -15.23269 -14.74528 -14.69611 -14.39768 -13.95817 -13.41154 -13.25922 -12.66329 -12.59097 -12.42198 -12.16570 -11.80119 -11.57969 -11.40758 -11.26101 -10.74365 -10.61591 -9.51548 -8.27408 -6.31449 0.77921 1.37558 1.39853 1.51633 2.38133 2.84080 3.08345 3.09569 3.54138 3.82679 4.17485 4.21187 4.23566 4.45498 4.64674 4.68315 4.77185 4.85229 4.90585 4.96042 5.03466 5.13941 5.52885 5.60893 5.67456 5.74646 5.94055 6.31814 6.36379 6.77380 7.33331 8.89574 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079141 B = 0.006437 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.715727 B = 4348.505787 C = 4603.767842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.031 0.969 9 C -0.012 4.012 10 C -0.090 4.090 11 C 0.053 3.947 12 N -0.516 5.516 13 C 0.031 3.969 14 C -0.173 4.173 15 C 0.374 3.626 16 O -0.478 6.478 17 C -0.025 4.025 18 H 0.266 0.734 19 H 0.021 0.979 20 H 0.019 0.981 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.088 0.912 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -7.371 -1.460 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.128 4.128 11 C -0.075 4.075 12 N -0.241 5.241 13 C -0.096 4.096 14 C -0.211 4.211 15 C 0.251 3.749 16 O -0.352 6.352 17 C -0.153 4.153 18 H 0.074 0.926 19 H 0.040 0.960 20 H 0.037 0.963 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.006 -7.664 -1.085 16.885 hybrid contribution -0.235 1.141 -0.720 1.369 sum 14.771 -6.523 -1.805 16.248 Atomic orbital electron populations 1.70074 1.08407 1.28132 1.52883 1.26055 0.95605 1.03650 0.94185 0.85634 0.79593 0.78097 0.79170 1.19196 1.21206 1.16690 1.21532 0.92328 0.93028 1.50115 0.95076 1.19512 0.93732 0.95154 0.96591 1.21294 0.93410 0.97007 1.01118 1.22361 0.95418 0.88643 1.01078 1.65047 1.04566 1.10649 1.43831 1.23314 0.99785 0.93212 0.93275 1.23099 0.92734 0.99396 1.05867 1.25308 0.89752 0.87353 0.72524 1.90427 1.28600 1.69571 1.46643 1.23362 0.90588 0.97865 1.03479 0.92567 0.96037 0.96275 0.92993 0.92931 0.90028 0.93850 0.88621 0.92615 0.86882 0.85584 0.89445 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 43.67 27.47 68.60 1.88 45.56 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.53 -30.42 9.66 25.60 0.25 -30.18 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.09 -3.30 4.83 30.59 0.15 -3.15 16 11 C 0.05 1.47 4.85 86.30 0.42 1.89 16 12 N -0.52 -12.33 5.39 -887.70 -4.79 -17.12 16 13 C 0.03 0.66 5.36 86.62 0.46 1.12 16 14 C -0.17 -2.93 6.95 30.98 0.22 -2.71 16 15 C 0.37 7.88 8.01 29.85 0.24 8.12 16 16 O -0.48 -13.02 17.99 -1.45 -0.03 -13.04 16 17 C -0.02 -0.49 6.59 85.64 0.56 0.07 16 18 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 19 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 20 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 21 H 0.05 1.89 7.21 -2.39 -0.02 1.87 16 22 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.13 7.95 -2.39 -0.02 1.11 16 25 H 0.10 2.09 7.84 -2.38 -0.02 2.07 16 26 H 0.06 1.17 8.01 -2.38 -0.02 1.15 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 1.64 7.64 -2.39 -0.02 1.62 16 30 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -67.07 251.75 1.30 -65.77 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.05 Total: 3.16 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 2.88 Total: -24.71 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -4.49 Total: -76.74 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.03 Total: -13.04 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -67.07 1.30 -65.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396499952.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.414 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds