Wall clock time and date at job start Mon Mar 30 2020 20:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.46908 * 110.99837 * 84.99962 * 4 2 1 6 6 C 1.50706 * 109.46935 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00044 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99610 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00581 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99675 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47414 * 59.99425 * 10 8 6 12 12 H 1.48505 * 109.46966 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47035 * 299.99366 * 10 8 6 14 14 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 15 15 N 1.34491 * 126.28865 * 255.00316 * 14 2 1 16 16 C 1.31131 * 105.61586 * 179.97438 * 15 14 2 17 17 O 1.33645 * 106.89326 * 359.97438 * 16 15 14 18 18 N 1.21297 * 109.81517 * 359.73860 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 1.00898 * 111.00604 * 208.95432 * 4 2 1 23 23 H 1.08993 * 109.47111 * 300.00155 * 5 4 2 24 24 H 1.09002 * 109.46900 * 60.00465 * 5 4 2 25 25 H 0.96994 * 120.00347 * 179.97438 * 9 8 6 26 26 H 1.07999 * 126.55263 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5875 -0.5219 -3.5560 7 1 2.8364 -1.5700 -3.4797 8 6 2.7317 0.1352 -4.7595 9 7 2.4281 1.4115 -4.8525 10 14 3.3569 -0.7877 -6.2584 11 1 2.4343 -1.9089 -6.5699 12 1 3.4205 0.1374 -7.4184 13 1 4.7126 -1.3255 -5.9787 14 6 2.0323 -0.7104 1.2306 15 7 2.5621 -0.1319 2.3230 16 6 2.8577 -1.1174 3.1361 17 8 2.5021 -2.2489 2.5201 18 7 2.0271 -1.9939 1.4336 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 2.9173 -1.1205 -1.0286 23 1 1.0872 0.6163 -2.5525 24 1 2.7589 1.0462 -2.1181 25 1 2.5299 1.8738 -5.6991 26 1 3.3032 -1.0312 4.1161 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397909001.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:03 Heat of formation + Delta-G solvation = 67.913028 kcal Electronic energy + Delta-G solvation = -12104.548888 eV Core-core repulsion = 9800.770984 eV Total energy + Delta-G solvation = -2303.777904 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.48184 -36.96560 -35.01922 -32.90358 -31.75663 -29.67498 -26.28110 -24.46514 -23.94103 -21.91141 -20.36644 -17.93813 -17.84968 -16.46863 -15.69094 -14.91356 -14.48698 -14.09673 -13.35212 -12.43221 -12.32442 -12.04221 -11.70684 -11.59904 -11.33816 -11.04948 -10.90216 -10.72427 -10.53068 -10.05660 -9.83578 -9.22051 -8.50458 -7.44856 -6.05138 -4.07318 1.33411 2.39274 3.12391 3.33827 3.37269 3.40866 3.81922 4.30639 4.43106 5.05046 5.26756 5.31137 5.63891 5.73409 5.84032 6.04060 6.20592 6.31548 6.62335 7.14718 7.33253 7.72953 8.05963 8.26223 8.34570 8.51415 9.00660 9.57448 11.05996 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.063059 B = 0.007528 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.924153 B = 3718.610894 C = 3915.769904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.170 3.830 3 H 0.067 0.933 4 N -0.675 5.675 5 C 0.194 3.806 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.901 3.099 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.173 3.827 15 N -0.485 5.485 16 C 0.142 3.858 17 O 0.074 5.926 18 N -0.359 5.359 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.332 0.668 23 H 0.034 0.966 24 H -0.010 1.010 25 H 0.263 0.737 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -3.354 14.275 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 H 0.085 0.915 4 N -0.308 5.308 5 C 0.068 3.932 6 C -0.554 4.554 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.729 3.271 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.100 4.100 15 N -0.218 5.218 16 C -0.099 4.099 17 O 0.014 5.986 18 N -0.064 5.064 19 H 0.081 0.919 20 H 0.092 0.908 21 H 0.068 0.932 22 H 0.149 0.851 23 H 0.052 0.948 24 H 0.008 0.992 25 H 0.072 0.928 26 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.885 -3.584 13.231 13.736 hybrid contribution 1.311 0.205 -0.263 1.353 sum 0.426 -3.380 12.968 13.408 Atomic orbital electron populations 1.21755 0.93006 1.02598 1.01648 1.19905 0.96235 0.94916 0.83105 0.91511 1.60871 1.32943 1.34328 1.02615 1.19679 0.96948 0.90117 0.86503 1.21102 1.43672 0.96766 0.93902 0.91937 1.24973 0.95560 0.94911 0.98990 1.69946 1.48626 1.08979 1.26114 0.86513 0.79358 0.79485 0.81767 1.20090 1.21296 1.20261 1.26260 0.99091 0.87048 0.97597 1.71890 1.16085 1.31440 1.02377 1.30426 0.98112 0.79876 1.01463 1.85347 1.55776 1.35566 1.21917 1.74732 1.15749 1.18021 0.97913 0.91907 0.90768 0.93226 0.85124 0.94810 0.99242 0.92774 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.40 37.16 0.35 -1.93 15 2 C 0.17 3.27 3.16 -68.87 -0.22 3.06 15 3 H 0.07 1.32 7.80 -51.93 -0.40 0.92 15 4 N -0.68 -15.23 6.29 -109.21 -0.69 -15.92 15 5 C 0.19 5.13 5.24 -4.97 -0.03 5.11 15 6 C -0.52 -14.83 9.32 -34.44 -0.32 -15.15 15 7 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 9 N -0.90 -26.87 13.29 55.43 0.74 -26.13 15 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 14 C 0.17 3.02 6.71 -156.37 -1.05 1.97 15 15 N -0.48 -7.28 11.55 -13.72 -0.16 -7.44 15 16 C 0.14 1.47 13.40 51.99 0.70 2.17 15 17 O 0.07 0.97 11.31 18.10 0.20 1.17 15 18 N -0.36 -6.10 12.16 30.87 0.38 -5.72 15 19 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 20 H 0.07 1.34 7.45 -51.93 -0.39 0.95 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.33 7.47 8.34 -39.29 -0.33 7.14 15 23 H 0.03 0.94 7.44 -51.93 -0.39 0.56 15 24 H -0.01 -0.28 8.06 -51.93 -0.42 -0.70 15 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 26 H 0.26 0.94 8.06 -52.49 -0.42 0.52 15 LS Contribution 237.67 15.07 3.58 3.58 Total: -1.00 -32.49 237.67 -4.37 -36.86 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.74 Total: -0.07 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.66 Total: -3.22 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.27 Total: -55.21 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.20 Total: 1.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.49 -4.37 -36.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397909001.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.772 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds