Wall clock time and date at job start Mon Mar 30 2020 20:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99692 * 2 1 4 4 C 1.53001 * 109.47375 * 270.00037 * 3 2 1 5 5 C 1.53006 * 115.56089 * 325.69498 * 4 3 2 6 6 C 1.53000 * 117.50223 * 180.02562 * 4 3 2 7 7 C 1.52997 * 117.49889 * 111.37624 * 4 3 2 8 8 C 1.34777 * 120.00012 * 180.02562 * 2 1 3 9 9 O 1.21692 * 119.99839 * 179.97438 * 8 2 1 10 10 C 1.46374 * 120.00145 * 0.02562 * 8 2 1 11 11 H 1.08004 * 120.00065 * 359.97438 * 10 8 2 12 12 C 1.40047 * 120.00041 * 180.02562 * 10 8 2 13 13 N 1.30672 * 119.99970 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00068 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47141 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46937 * 119.99552 * 14 12 10 17 17 H 1.48489 * 109.47479 * 240.00241 * 14 12 10 18 18 H 1.08995 * 109.47470 * 90.00194 * 1 2 3 19 19 H 1.09000 * 109.47149 * 209.99683 * 1 2 3 20 20 H 1.09000 * 109.47522 * 329.99493 * 1 2 3 21 21 H 1.09004 * 109.46826 * 150.00690 * 3 2 1 22 22 H 1.08996 * 109.47496 * 30.00408 * 3 2 1 23 23 H 1.09000 * 109.46919 * 274.30794 * 5 4 3 24 24 H 1.09000 * 109.47139 * 34.30150 * 5 4 3 25 25 H 1.08994 * 109.47047 * 154.31069 * 5 4 3 26 26 H 1.08990 * 117.49990 * 145.01974 * 6 4 3 27 27 H 1.09004 * 117.49237 * 359.97438 * 6 4 3 28 28 H 1.08999 * 117.49685 * 0.02562 * 7 4 3 29 29 H 1.08997 * 117.50044 * 214.98097 * 7 4 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 2.6987 0.5812 -2.4450 6 6 3.2104 3.0223 -1.6562 7 6 1.7088 2.9502 -1.9436 8 6 2.1389 -1.1672 -0.0005 9 8 3.3558 -1.1672 -0.0010 10 6 1.4070 -2.4349 -0.0017 11 1 0.3270 -2.4349 -0.0017 12 6 2.1073 -3.6477 -0.0017 13 7 3.4140 -3.6477 -0.0011 14 14 1.1733 -5.2655 -0.0024 15 1 -0.2867 -4.9941 -0.0035 16 1 1.5325 -6.0438 -1.2150 17 1 1.5315 -6.0444 1.2100 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8899 0.5139 21 1 3.1499 1.1384 0.5138 22 1 1.6084 2.0284 0.5139 23 1 3.7543 0.3095 -2.4340 24 1 2.0976 -0.2857 -2.1707 25 1 2.4200 0.9153 -3.4443 26 1 3.8841 3.0807 -2.5109 27 1 3.5270 3.5708 -0.7690 28 1 1.0383 3.4513 -1.2455 29 1 1.3952 2.9613 -2.9874 30 1 3.8990 -4.4877 -0.0015 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693540407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:48 Heat of formation + Delta-G solvation = -12.225104 kcal Electronic energy + Delta-G solvation = -12923.156437 eV Core-core repulsion = 10719.443827 eV Total energy + Delta-G solvation = -2203.712610 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.50377 -36.55180 -33.48668 -32.39895 -28.23915 -27.27146 -25.82914 -24.26758 -22.07611 -19.69890 -18.13856 -16.37556 -15.53757 -15.17485 -14.63916 -14.14570 -13.64248 -12.98478 -12.46302 -12.28575 -11.78500 -11.51428 -11.40527 -11.26161 -11.09979 -10.98645 -10.81459 -10.62001 -10.25001 -10.08985 -9.76054 -9.06945 -8.83613 -7.52109 -7.15712 -6.16675 -4.61724 3.13417 3.21920 3.25880 4.08480 4.20598 4.58148 4.68459 5.18583 5.32267 5.43551 5.70622 5.80138 5.92750 6.07547 6.09226 6.17466 6.36159 6.44396 6.46145 6.58431 6.63325 6.72937 6.77539 7.17370 7.47097 7.68998 8.18527 8.40150 9.05126 9.47857 10.61163 10.80633 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058399 B = 0.010205 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.345426 B = 2743.104454 C = 2921.387390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.645 5.645 3 C 0.163 3.837 4 C -0.122 4.122 5 C -0.105 4.105 6 C -0.181 4.181 7 C -0.183 4.183 8 C 0.558 3.442 9 O -0.573 6.573 10 C -0.545 4.545 11 H 0.072 0.928 12 C 0.087 3.913 13 N -0.767 5.767 14 Si 0.904 3.096 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.030 0.970 19 H 0.070 0.930 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 7.359 -2.059 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.382 5.382 3 C 0.038 3.962 4 C -0.124 4.124 5 C -0.163 4.163 6 C -0.218 4.218 7 C -0.220 4.220 8 C 0.364 3.636 9 O -0.455 6.455 10 C -0.582 4.582 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.729 3.271 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.202 1.202 18 H 0.048 0.952 19 H 0.088 0.912 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.082 7.232 -2.041 8.551 hybrid contribution -0.577 -0.663 -0.104 0.885 sum -4.658 6.569 -2.146 8.334 Atomic orbital electron populations 1.21369 0.82338 1.00786 0.99539 1.47951 1.05050 1.05312 1.79916 1.20543 0.97465 0.86355 0.91866 1.22111 1.02434 0.89196 0.98622 1.21237 1.02480 0.97752 0.94796 1.22940 0.94257 1.01918 1.02730 1.23102 0.94441 1.03159 1.01289 1.18186 0.87020 0.82181 0.76229 1.90605 1.13915 1.86244 1.54733 1.21064 0.93723 0.89329 1.54046 0.91015 1.25726 0.94589 1.00241 0.92660 1.70034 1.07002 1.27054 1.35483 0.86372 0.80559 0.81988 0.78188 1.18774 1.20213 1.20210 0.95187 0.91150 0.94300 0.90648 0.92938 0.92463 0.90396 0.94507 0.89397 0.89312 0.89503 0.89615 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 10.19 59.85 0.61 2.58 16 2 N -0.64 -14.77 2.15 -183.25 -0.39 -15.17 16 3 C 0.16 3.28 5.64 -4.04 -0.02 3.26 16 4 C -0.12 -2.24 2.57 -154.51 -0.40 -2.64 16 5 C -0.11 -2.17 9.04 37.16 0.34 -1.84 16 6 C -0.18 -2.75 9.97 -26.71 -0.27 -3.02 16 7 C -0.18 -2.71 9.82 -26.71 -0.26 -2.97 16 8 C 0.56 15.72 5.72 -12.99 -0.07 15.65 16 9 O -0.57 -18.21 14.18 5.20 0.07 -18.14 16 10 C -0.54 -15.25 8.74 -35.63 -0.31 -15.56 16 11 H 0.07 1.85 6.00 -52.48 -0.31 1.53 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 13 N -0.77 -22.88 11.83 55.55 0.66 -22.23 16 14 Si 0.90 20.11 29.56 -169.99 -5.02 15.08 16 15 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 19 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 20 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 21 H 0.08 1.70 7.42 -51.93 -0.39 1.31 16 22 H 0.05 0.90 7.65 -51.93 -0.40 0.51 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.08 1.86 5.62 -51.93 -0.29 1.57 16 25 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -32.39 251.77 -5.56 -37.96 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.19 Total: 0.91 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.48 Total: -2.21 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.26 Total: -37.39 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.07 Total: -18.14 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.39 -5.56 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693540407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.730 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds