Wall clock time and date at job start Mon Mar 30 2020 20:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99692 * 2 1 4 4 C 1.53001 * 109.47375 * 270.00037 * 3 2 1 5 5 C 1.53006 * 115.56089 * 325.69498 * 4 3 2 6 6 C 1.53000 * 117.50223 * 180.02562 * 4 3 2 7 7 C 1.52997 * 117.49889 * 111.37624 * 4 3 2 8 8 C 1.34777 * 120.00012 * 180.02562 * 2 1 3 9 9 O 1.21692 * 119.99839 * 179.97438 * 8 2 1 10 10 C 1.46374 * 120.00145 * 0.02562 * 8 2 1 11 11 H 1.08004 * 120.00065 * 359.97438 * 10 8 2 12 12 C 1.40047 * 120.00041 * 180.02562 * 10 8 2 13 13 N 1.30672 * 119.99970 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00068 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47141 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46937 * 119.99552 * 14 12 10 17 17 H 1.48489 * 109.47479 * 240.00241 * 14 12 10 18 18 H 1.08995 * 109.47470 * 90.00194 * 1 2 3 19 19 H 1.09000 * 109.47149 * 209.99683 * 1 2 3 20 20 H 1.09000 * 109.47522 * 329.99493 * 1 2 3 21 21 H 1.09004 * 109.46826 * 150.00690 * 3 2 1 22 22 H 1.08996 * 109.47496 * 30.00408 * 3 2 1 23 23 H 1.09000 * 109.46919 * 274.30794 * 5 4 3 24 24 H 1.09000 * 109.47139 * 34.30150 * 5 4 3 25 25 H 1.08994 * 109.47047 * 154.31069 * 5 4 3 26 26 H 1.08990 * 117.49990 * 145.01974 * 6 4 3 27 27 H 1.09004 * 117.49237 * 359.97438 * 6 4 3 28 28 H 1.08999 * 117.49685 * 0.02562 * 7 4 3 29 29 H 1.08997 * 117.50044 * 214.98097 * 7 4 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 2.6987 0.5812 -2.4450 6 6 3.2104 3.0223 -1.6562 7 6 1.7088 2.9502 -1.9436 8 6 2.1389 -1.1672 -0.0005 9 8 3.3558 -1.1672 -0.0010 10 6 1.4070 -2.4349 -0.0017 11 1 0.3270 -2.4349 -0.0017 12 6 2.1073 -3.6477 -0.0017 13 7 3.4140 -3.6477 -0.0011 14 14 1.1733 -5.2655 -0.0024 15 1 -0.2867 -4.9941 -0.0035 16 1 1.5325 -6.0438 -1.2150 17 1 1.5315 -6.0444 1.2100 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8899 0.5139 21 1 3.1499 1.1384 0.5138 22 1 1.6084 2.0284 0.5139 23 1 3.7543 0.3095 -2.4340 24 1 2.0976 -0.2857 -2.1707 25 1 2.4200 0.9153 -3.4443 26 1 3.8841 3.0807 -2.5109 27 1 3.5270 3.5708 -0.7690 28 1 1.0383 3.4513 -1.2455 29 1 1.3952 2.9613 -2.9874 30 1 3.8990 -4.4877 -0.0015 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693540407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:48 Heat of formation + Delta-G solvation = -33.322374 kcal Electronic energy + Delta-G solvation = -12924.071284 eV Core-core repulsion = 10719.443827 eV Total energy + Delta-G solvation = -2204.627457 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19386 -38.26106 -35.37041 -34.54120 -29.84472 -29.02779 -27.68846 -26.05958 -23.24805 -21.57850 -19.70047 -18.34982 -17.59393 -16.64073 -16.34927 -15.97619 -15.20854 -14.52400 -14.14757 -14.09327 -13.47523 -13.14267 -13.06038 -13.01348 -12.92807 -12.68273 -12.25381 -12.20315 -12.02010 -11.96952 -11.13488 -10.92104 -10.45194 -9.69225 -9.00887 -8.25257 -6.80071 1.39476 1.39692 1.56968 2.24858 2.50545 2.81416 3.07267 3.64546 3.92036 4.00368 4.12139 4.20892 4.58120 4.63886 4.76960 4.79523 4.90076 4.99887 5.03540 5.06544 5.13072 5.24639 5.31316 5.39929 5.46284 5.82967 6.19216 6.49065 6.91644 7.49237 8.53951 8.72959 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058399 B = 0.010205 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.345426 B = 2743.104454 C = 2921.387390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.647 5.647 3 C 0.163 3.837 4 C -0.161 4.161 5 C -0.095 4.095 6 C -0.169 4.169 7 C -0.149 4.149 8 C 0.545 3.455 9 O -0.625 6.625 10 C -0.571 4.571 11 H 0.090 0.910 12 C 0.028 3.972 13 N -0.822 5.822 14 Si 0.992 3.008 15 H -0.246 1.246 16 H -0.271 1.271 17 H -0.270 1.270 18 H 0.039 0.961 19 H 0.061 0.939 20 H 0.078 0.922 21 H 0.037 0.963 22 H 0.090 0.910 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 8.446 -2.383 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.382 5.382 3 C 0.039 3.961 4 C -0.163 4.163 5 C -0.152 4.152 6 C -0.207 4.207 7 C -0.186 4.186 8 C 0.351 3.649 9 O -0.511 6.511 10 C -0.608 4.608 11 H 0.108 0.892 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.811 3.189 15 H -0.169 1.169 16 H -0.196 1.196 17 H -0.195 1.195 18 H 0.058 0.942 19 H 0.080 0.920 20 H 0.096 0.904 21 H 0.056 0.944 22 H 0.108 0.892 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.455 8.372 -2.366 10.834 hybrid contribution 0.147 -0.896 -0.013 0.908 sum -6.308 7.477 -2.379 10.068 Atomic orbital electron populations 1.21532 0.79676 1.02303 1.00583 1.47800 1.06828 1.04984 1.78609 1.20650 0.96090 0.85922 0.93456 1.21909 1.07469 0.90034 0.96861 1.21060 0.99499 0.97545 0.97124 1.23049 0.95292 0.98763 1.03563 1.23194 0.94256 0.98718 1.02426 1.18490 0.86624 0.84028 0.75782 1.90554 1.16107 1.87494 1.56969 1.21578 0.94794 0.90067 1.54331 0.89205 1.26952 0.95467 1.04831 0.91371 1.70211 1.09442 1.28572 1.36968 0.85058 0.79554 0.75839 0.78406 1.16856 1.19587 1.19452 0.94247 0.92037 0.90362 0.94417 0.89217 0.95824 0.94291 0.91873 0.88755 0.87889 0.87195 0.88263 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.66 10.19 127.77 1.30 4.96 16 2 N -0.65 -29.68 2.15 -851.90 -1.84 -31.52 16 3 C 0.16 6.48 5.64 86.38 0.49 6.97 16 4 C -0.16 -5.72 2.57 -52.18 -0.13 -5.86 16 5 C -0.09 -3.98 9.04 71.98 0.65 -3.33 16 6 C -0.17 -4.70 9.97 30.61 0.31 -4.39 16 7 C -0.15 -3.79 9.82 30.61 0.30 -3.49 16 8 C 0.55 31.81 5.72 86.36 0.49 32.30 16 9 O -0.62 -42.01 14.18 -4.32 -0.06 -42.07 16 10 C -0.57 -32.57 8.74 24.83 0.22 -32.35 16 11 H 0.09 4.61 6.00 -2.91 -0.02 4.59 16 12 C 0.03 1.61 5.50 85.30 0.47 2.08 16 13 N -0.82 -51.01 11.83 21.84 0.26 -50.75 16 14 Si 0.99 41.49 29.56 68.60 2.03 43.52 16 15 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 19 H 0.06 2.30 6.09 -2.39 -0.01 2.28 16 20 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 21 H 0.04 1.75 7.42 -2.38 -0.02 1.73 16 22 H 0.09 2.83 7.65 -2.39 -0.02 2.81 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 1.91 5.62 -2.39 -0.01 1.90 16 25 H 0.06 2.20 7.90 -2.39 -0.02 2.18 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.11 2.34 8.05 -2.39 -0.02 2.32 16 29 H 0.10 2.30 8.05 -2.39 -0.02 2.28 16 30 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 Total: -1.00 -74.51 251.77 5.60 -68.91 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.12 Total: 15.02 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.09 Total: -3.12 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.58 Total: -82.27 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.06 Total: -42.07 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -74.51 5.60 -68.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693540407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.588 kcal (2) G-P(sol) polarization free energy of solvation -74.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds