Wall clock time and date at job start Mon Mar 30 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55177 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29512 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67315 * 2 1 3 6 6 H 1.09000 * 117.49792 * 359.97438 * 5 2 1 7 7 N 1.46907 * 117.50143 * 215.00172 * 5 2 1 8 8 C 1.46894 * 110.99999 * 154.99515 * 7 5 2 9 9 C 1.52997 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.47453 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47337 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00320 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00299 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00694 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47032 * 90.00166 * 15 13 11 17 17 H 1.48498 * 109.47150 * 210.00031 * 15 13 11 18 18 H 1.48501 * 109.47293 * 330.00346 * 15 13 11 19 19 H 1.09002 * 109.47153 * 274.32690 * 1 2 3 20 20 H 1.09001 * 109.46832 * 154.32881 * 1 2 3 21 21 H 1.09004 * 109.47261 * 34.32862 * 1 2 3 22 22 H 1.08999 * 109.46923 * 85.57965 * 3 2 1 23 23 H 1.08997 * 109.47612 * 205.58182 * 3 2 1 24 24 H 1.09006 * 109.47068 * 325.58848 * 3 2 1 25 25 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 26 26 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 27 27 H 1.00897 * 111.00141 * 278.95741 * 7 5 2 28 28 H 1.09000 * 109.47965 * 300.00207 * 8 7 5 29 29 H 1.09002 * 109.47244 * 60.00775 * 8 7 5 30 30 H 1.08996 * 109.47441 * 300.00406 * 9 8 7 31 31 H 1.09007 * 109.47191 * 60.00135 * 9 8 7 32 32 H 1.08996 * 109.47113 * 300.00588 * 10 9 8 33 33 H 1.08998 * 109.46757 * 60.00197 * 10 9 8 34 34 H 0.96993 * 120.00721 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6112 -1.8578 1.2691 7 7 3.4965 -0.7891 1.4439 8 6 3.7451 -1.7017 2.5678 9 6 5.0626 -1.3254 3.2484 10 6 5.3221 -2.2763 4.4187 11 6 6.6194 -1.9052 5.0895 12 1 7.2007 -1.0740 4.7186 13 6 7.0645 -2.6269 6.1767 14 7 8.1964 -2.3027 6.7625 15 14 6.0588 -4.0642 6.8187 16 1 6.4825 -5.3108 6.1318 17 1 6.2760 -4.2065 8.2808 18 1 4.6185 -3.8182 6.5538 19 1 -0.3633 0.0775 1.0247 20 1 -0.3633 -0.9263 -0.4452 21 1 -0.3634 0.8487 -0.5796 22 1 2.2752 1.7423 1.0246 23 1 3.1829 1.3085 -0.4437 24 1 1.5817 2.0739 -0.5808 25 1 1.6113 -1.8590 -1.2674 26 1 3.1715 -0.8755 -1.2680 27 1 4.2692 -0.7954 0.7951 28 1 2.9298 -1.6234 3.2869 29 1 3.8063 -2.7253 2.1980 30 1 5.8783 -1.4035 2.5296 31 1 5.0011 -0.3018 3.6183 32 1 4.5065 -2.1987 5.1376 33 1 5.3838 -3.2996 4.0484 34 1 8.5093 -2.8102 7.5276 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045119160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:21 Heat of formation + Delta-G solvation = -19.064677 kcal Electronic energy + Delta-G solvation = -12196.707738 eV Core-core repulsion = 10128.531636 eV Total energy + Delta-G solvation = -2068.176102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.71101 -36.81014 -34.87178 -32.78345 -29.78750 -28.40946 -27.73257 -23.99835 -22.61547 -21.77961 -19.67089 -18.90104 -16.70474 -16.58089 -16.13544 -15.74732 -14.86187 -14.69785 -14.55832 -14.05722 -13.80683 -13.45576 -13.25749 -12.93254 -12.82950 -12.60819 -12.47495 -11.97830 -11.85238 -11.65351 -11.58461 -11.30936 -11.25825 -10.76641 -10.48722 -9.07607 -8.29641 -6.34216 1.35651 1.38132 1.50402 2.36443 2.80531 3.05569 3.15633 3.91413 3.94798 4.05922 4.24640 4.30196 4.38433 4.56986 4.68543 4.85522 4.86110 4.90225 4.95920 5.02420 5.09503 5.11580 5.14183 5.18217 5.36234 5.50777 5.55740 5.60094 5.66022 6.14826 6.29404 6.44387 6.74100 7.30516 8.87498 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.068606 B = 0.005726 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.029283 B = 4888.639083 C = 5083.742651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.189 4.189 5 C 0.013 3.987 6 H 0.106 0.894 7 N -0.662 5.662 8 C 0.073 3.927 9 C -0.091 4.091 10 C -0.010 4.010 11 C -0.535 4.535 12 H 0.029 0.971 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.246 1.246 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.343 0.657 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 1.140 -14.449 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.125 4.125 3 C -0.159 4.159 4 C -0.227 4.227 5 C -0.097 4.097 6 H 0.124 0.876 7 N -0.292 5.292 8 C -0.056 4.056 9 C -0.129 4.129 10 C -0.048 4.048 11 C -0.573 4.573 12 H 0.047 0.953 13 C -0.195 4.195 14 N -0.594 5.594 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.169 1.169 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.162 0.838 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.282 1.587 -13.904 21.469 hybrid contribution 0.648 -1.192 0.194 1.370 sum -15.634 0.395 -13.709 20.797 Atomic orbital electron populations 1.21354 0.91054 1.02600 1.01946 1.21906 0.95287 0.91890 1.03452 1.21132 0.99499 0.93869 1.01368 1.23765 1.03031 1.01888 0.94047 1.22648 0.94203 1.00827 0.92054 0.87590 1.60146 1.04097 1.52923 1.12006 1.21906 0.97402 0.93525 0.92748 1.21271 0.95740 0.99156 0.96762 1.19486 0.94788 0.95801 0.94710 1.21520 1.06604 1.15285 1.13894 0.95288 1.26073 0.96055 1.00755 0.96584 1.70073 1.23194 1.42754 1.23397 0.85594 0.80384 0.78938 0.77333 1.19002 1.20904 1.16943 0.92566 0.91785 0.91197 0.93240 0.93120 0.91737 0.87639 0.88692 0.83784 0.91344 0.94798 0.93443 0.93361 0.96163 0.96214 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.85 71.98 0.71 -1.11 16 2 C -0.12 -2.47 2.70 -52.18 -0.14 -2.61 16 3 C -0.10 -2.09 9.31 71.98 0.67 -1.42 16 4 C -0.19 -3.53 9.52 30.59 0.29 -3.24 16 5 C 0.01 0.31 6.01 44.91 0.27 0.58 16 6 H 0.11 2.41 7.90 -2.39 -0.02 2.39 16 7 N -0.66 -18.31 6.15 -491.59 -3.02 -21.33 16 8 C 0.07 2.32 5.54 86.30 0.48 2.80 16 9 C -0.09 -3.66 5.41 30.60 0.17 -3.50 16 10 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 11 C -0.54 -31.83 9.66 25.60 0.25 -31.59 16 12 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 13 C 0.00 0.10 5.47 84.65 0.46 0.57 16 14 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 15 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 19 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 20 H 0.06 0.90 7.90 -2.39 -0.02 0.88 16 21 H 0.07 0.97 7.93 -2.38 -0.02 0.95 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.06 7.90 -2.39 -0.02 1.04 16 24 H 0.06 1.10 7.93 -2.38 -0.02 1.09 16 25 H 0.11 1.67 8.05 -2.39 -0.02 1.65 16 26 H 0.09 1.75 8.00 -2.39 -0.02 1.74 16 27 H 0.34 9.02 8.52 -89.70 -0.76 8.25 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 33 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -65.52 279.87 2.66 -62.87 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.22 Total: 12.36 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.27 Total: -39.87 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.72 Total: -82.12 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -65.52 2.66 -62.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045119160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.804 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds