Wall clock time and date at job start Mon Mar 30 2020 20:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 C 1.53002 * 109.47405 * 120.00434 * 2 1 3 5 5 N 1.46890 * 109.47096 * 175.00016 * 4 2 1 6 6 C 1.48567 * 110.99888 * 290.12351 * 5 4 2 7 7 C 1.54382 * 104.59210 * 200.96419 * 6 5 4 8 8 C 1.54253 * 105.06299 * 23.85099 * 7 6 5 9 9 H 1.09007 * 110.32546 * 241.00074 * 8 7 6 10 10 C 1.50706 * 110.32429 * 118.89959 * 8 7 6 11 11 H 1.07997 * 119.99562 * 242.83076 * 10 8 7 12 12 C 1.37877 * 120.00159 * 62.82618 * 10 8 7 13 13 N 1.31510 * 119.99756 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00022 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47207 * 59.99514 * 14 12 10 16 16 H 1.48491 * 109.47049 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46718 * 299.99999 * 14 12 10 18 18 C 1.48728 * 111.01407 * 174.61749 * 5 4 2 19 19 H 1.09001 * 109.46905 * 299.99446 * 1 2 3 20 20 H 1.08994 * 109.47198 * 59.99400 * 1 2 3 21 21 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46989 * 240.00005 * 2 1 3 23 23 H 1.09002 * 109.47099 * 60.00072 * 3 2 1 24 24 H 1.08996 * 109.47124 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47049 * 300.00618 * 3 2 1 26 26 H 1.08999 * 109.47034 * 54.99567 * 4 2 1 27 27 H 1.09004 * 109.46497 * 294.99981 * 4 2 1 28 28 H 1.08997 * 110.40994 * 82.18463 * 6 5 4 29 29 H 1.08998 * 110.41020 * 319.73547 * 6 5 4 30 30 H 1.09001 * 110.32115 * 264.95281 * 7 6 5 31 31 H 1.09002 * 110.41197 * 142.79671 * 7 6 5 32 32 H 0.96998 * 119.99911 * 180.02562 * 13 12 10 33 33 H 1.08997 * 110.38814 * 40.23883 * 18 5 4 34 34 H 1.08999 * 110.50240 * 277.74497 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1903 6 6 3.9270 -1.7808 0.1329 7 6 5.3601 -2.1934 0.5321 8 6 5.4390 -1.9483 2.0530 9 1 6.2099 -1.2114 2.2783 10 6 5.7226 -3.2392 2.7772 11 1 5.0005 -3.6366 3.4751 12 6 6.9037 -3.9127 2.5488 13 7 7.7831 -3.4284 1.6993 14 14 7.2549 -5.5131 3.4459 15 1 6.2042 -6.5082 3.1128 16 1 8.5807 -6.0347 3.0271 17 1 7.2587 -5.2688 4.9107 18 6 4.0480 -1.4069 2.4471 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6768 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6055 -1.7199 1.2951 27 1 1.7517 -0.1584 2.1369 28 1 3.9296 -1.2919 -0.8413 29 1 3.2704 -2.6507 0.1211 30 1 6.0911 -1.5755 0.0106 31 1 5.5284 -3.2471 0.3091 32 1 8.6139 -3.9024 1.5382 33 1 3.4099 -2.2177 2.7983 34 1 4.1427 -0.6373 3.2131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084428498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:35 Heat of formation + Delta-G solvation = -19.049891 kcal Electronic energy + Delta-G solvation = -12940.514527 eV Core-core repulsion = 10872.339066 eV Total energy + Delta-G solvation = -2068.175461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.27973 -35.34183 -32.69935 -29.89740 -28.09024 -26.92174 -25.33294 -23.57982 -20.70432 -19.66106 -18.89900 -16.24524 -15.19569 -15.12718 -14.53236 -14.00254 -13.71000 -12.98849 -12.77191 -12.28464 -12.09985 -11.74693 -11.51309 -11.07816 -11.01029 -10.84185 -10.67779 -10.56465 -10.32368 -10.15707 -10.11685 -9.69141 -9.20034 -8.70017 -8.35413 -7.71402 -5.99225 -4.03063 3.32455 3.37311 3.39625 4.43559 4.72442 5.05993 5.18408 5.33564 5.43736 5.69948 5.80838 5.87813 5.90152 5.97748 6.04460 6.14696 6.22839 6.28324 6.35787 6.47661 6.54634 6.60210 6.67195 6.93355 7.17889 7.24124 7.61464 7.72032 7.81984 7.93492 8.03858 8.49858 9.00009 9.60723 11.10106 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.073178 B = 0.007773 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.537976 B = 3601.572044 C = 3720.312289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.049 3.951 5 N -0.515 5.515 6 C 0.032 3.968 7 C -0.092 4.092 8 C 0.048 3.952 9 H 0.033 0.967 10 C -0.517 4.517 11 H 0.053 0.947 12 C 0.062 3.938 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.040 3.960 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 5.021 -3.043 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.193 4.193 4 C -0.080 4.080 5 N -0.238 5.238 6 C -0.095 4.095 7 C -0.131 4.131 8 C 0.029 3.971 9 H 0.051 0.949 10 C -0.555 4.555 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.087 4.087 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.910 5.531 -3.215 11.796 hybrid contribution -0.138 -1.780 0.611 1.887 sum -10.048 3.751 -2.604 11.037 Atomic orbital electron populations 1.21826 0.95847 1.01292 1.01368 1.21087 0.94428 0.97153 0.98480 1.21696 1.02545 0.94936 1.00131 1.22279 0.89825 0.98251 0.97601 1.65370 1.08038 1.45050 1.05372 1.23178 0.98651 0.92960 0.94750 1.22198 0.91454 1.00597 0.98815 1.19357 0.90301 0.95694 0.91725 0.94872 1.21180 1.03002 1.06763 1.24579 0.92847 1.24967 0.96135 0.97608 0.95231 1.69976 1.08829 1.39054 1.34694 0.86702 0.77371 0.83959 0.80222 1.20384 1.21288 1.20274 1.23296 0.98428 0.96200 0.90788 0.92901 0.92917 0.93082 0.91419 0.93428 0.91234 0.93971 0.95435 0.91664 0.92216 0.95262 0.93715 0.91712 0.92987 0.94888 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.09 -1.27 2.92 -90.62 -0.26 -1.54 16 3 C -0.14 -1.80 9.08 37.16 0.34 -1.46 16 4 C 0.05 0.80 4.20 -3.83 -0.02 0.78 16 5 N -0.51 -10.02 4.82 -229.83 -1.11 -11.13 16 6 C 0.03 0.65 5.74 -2.18 -0.01 0.64 16 7 C -0.09 -2.21 5.80 -25.35 -0.15 -2.36 16 8 C 0.05 1.24 2.96 -90.39 -0.27 0.97 16 9 H 0.03 0.93 8.14 -51.92 -0.42 0.50 16 10 C -0.52 -14.35 8.35 -34.44 -0.29 -14.64 16 11 H 0.05 1.46 7.57 -52.49 -0.40 1.07 16 12 C 0.06 1.75 5.11 -17.82 -0.09 1.66 16 13 N -0.89 -25.76 12.46 55.43 0.69 -25.07 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.04 0.88 6.03 -2.09 -0.01 0.86 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.98 7.05 -51.93 -0.37 0.61 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.46 7.88 -51.93 -0.41 0.05 16 27 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.06 1.10 7.64 -51.93 -0.40 0.70 16 29 H 0.03 0.58 7.82 -51.93 -0.41 0.18 16 30 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.69 7.33 -51.93 -0.38 1.31 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.03 0.73 7.55 -51.93 -0.39 0.34 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -28.12 269.71 -7.88 -36.00 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.09 Total: -3.87 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.42 Total: -16.39 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.42 Total: -36.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.12 -7.88 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084428498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.953 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds