Wall clock time and date at job start Mon Mar 30 2020 20:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46433 * 2 1 4 4 C 1.52994 * 109.47290 * 120.00183 * 2 1 3 5 5 C 1.50707 * 109.46915 * 183.51791 * 4 2 1 6 6 H 1.08001 * 120.00055 * 1.53701 * 5 4 2 7 7 C 1.37877 * 120.00092 * 181.53459 * 5 4 2 8 8 N 1.31518 * 119.99919 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47414 * 60.00309 * 9 7 5 11 11 H 1.48503 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47158 * 299.99843 * 9 7 5 13 13 N 1.46899 * 109.46982 * 240.00445 * 2 1 3 14 14 C 1.48625 * 111.00011 * 311.28592 * 13 2 1 15 15 C 1.54919 * 102.81619 * 158.56044 * 14 13 2 16 16 C 1.52176 * 103.16325 * 322.89300 * 15 14 13 17 17 O 1.20763 * 127.09038 * 202.08192 * 16 15 14 18 18 C 1.47900 * 111.00242 * 68.09403 * 13 2 1 19 19 H 1.09010 * 109.46786 * 187.68417 * 1 2 3 20 20 H 1.08995 * 109.47699 * 67.68436 * 1 2 3 21 21 H 1.09006 * 109.47374 * 307.67873 * 1 2 3 22 22 H 1.09002 * 109.47473 * 303.51149 * 4 2 1 23 23 H 1.08992 * 109.47411 * 63.51897 * 4 2 1 24 24 H 0.96996 * 119.99898 * 179.97438 * 8 7 5 25 25 H 1.09006 * 110.74068 * 276.88932 * 14 13 2 26 26 H 1.09000 * 110.74551 * 40.22657 * 14 13 2 27 27 H 1.09000 * 110.67623 * 204.47589 * 15 14 13 28 28 H 1.08994 * 110.82850 * 81.38352 * 15 14 13 29 29 H 1.09004 * 109.86159 * 334.36764 * 18 13 2 30 30 H 1.09001 * 109.86833 * 95.33294 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5446 -0.6461 1.2934 6 1 4.0816 -0.1138 0.5223 7 6 4.2354 -1.2570 2.3184 8 7 3.5814 -1.9047 3.2578 9 14 6.1003 -1.1644 2.3729 10 1 6.5234 0.2568 2.4522 11 1 6.5976 -1.8967 3.5653 12 1 6.6626 -1.7805 1.1443 13 7 2.0196 -0.6924 -1.1995 14 6 1.3340 -1.9990 -1.3774 15 6 1.5353 -2.2901 -2.8857 16 6 1.4103 -0.9143 -3.5239 17 8 1.1301 -0.6669 -4.6722 18 6 1.7106 0.0814 -2.4215 19 1 -0.3633 -1.0186 0.1374 20 1 -0.3634 0.3902 -0.9506 21 1 -0.3634 0.6282 0.8134 22 1 1.6262 -0.2451 2.1381 23 1 1.7292 -1.7654 1.2182 24 1 4.0675 -2.3347 3.9786 25 1 1.8076 -2.7695 -0.7690 26 1 0.2738 -1.9144 -1.1387 27 1 0.7576 -2.9582 -3.2558 28 1 2.5232 -2.7118 -3.0705 29 1 0.8412 0.7156 -2.2483 30 1 2.5677 0.6956 -2.6977 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781675.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:20 Heat of formation + Delta-G solvation = -31.917927 kcal Electronic energy + Delta-G solvation = -12753.223794 eV Core-core repulsion = 10548.657239 eV Total energy + Delta-G solvation = -2204.566555 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.81518 -37.59939 -33.58457 -31.94181 -29.15354 -27.37863 -26.93029 -23.37935 -22.04224 -19.60177 -18.86919 -16.28148 -16.00993 -15.79490 -14.73248 -14.50528 -14.33921 -13.63537 -13.30350 -12.97858 -12.14699 -11.89103 -11.84199 -11.60307 -11.38238 -10.98341 -10.89056 -10.66349 -10.45148 -10.03787 -9.46173 -9.22398 -9.03789 -8.29387 -7.79150 -5.91881 -3.90206 1.98877 3.39499 3.43418 3.46984 4.25141 4.44659 4.54390 4.79730 5.12731 5.33057 5.45212 5.54214 5.64435 5.73081 5.82042 5.89367 5.95635 6.10820 6.26356 6.44541 6.56806 6.86159 7.24965 7.35928 7.60839 7.74061 7.86500 8.08029 8.52786 9.15296 9.71834 11.19977 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.009741 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.273259 B = 2873.782405 C = 3143.599925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 H 0.073 0.927 4 C 0.033 3.967 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.476 5.476 14 C 0.033 3.967 15 C -0.183 4.183 16 C 0.369 3.631 17 O -0.456 6.456 18 C -0.032 4.032 19 H 0.059 0.941 20 H 0.041 0.959 21 H 0.059 0.941 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.258 0.742 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 0.868 -8.099 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 H 0.092 0.908 4 C -0.004 4.004 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.200 5.200 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.244 3.756 17 O -0.329 6.329 18 C -0.161 4.161 19 H 0.077 0.923 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.560 0.842 -8.463 9.651 hybrid contribution 0.202 0.109 0.193 0.300 sum -4.358 0.952 -8.270 9.397 Atomic orbital electron populations 1.22568 0.99494 1.01935 1.00663 1.22144 0.90280 0.98775 0.92134 0.90832 1.19127 0.96433 0.95364 0.89450 1.21125 0.91521 1.32459 1.08097 0.92155 1.25002 0.98096 0.95834 0.95908 1.69950 1.35319 1.35954 1.13215 0.86680 0.86270 0.77966 0.77155 1.20494 1.21655 1.20339 1.65304 1.52778 1.01954 0.99992 1.23315 0.98172 0.94332 0.93590 1.23116 1.04677 0.96961 0.97388 1.25260 0.68998 0.93641 0.87670 1.90388 1.37126 1.86055 1.19365 1.23410 1.02408 0.97782 0.92496 0.92253 0.94025 0.92152 0.96238 0.96177 0.93214 0.88244 0.92773 0.89127 0.87089 0.90644 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 8.16 37.16 0.30 -2.68 16 2 C 0.07 1.43 2.23 -67.72 -0.15 1.28 16 3 H 0.07 1.43 8.10 -51.92 -0.42 1.01 16 4 C 0.03 0.81 4.45 -27.88 -0.12 0.69 16 5 C -0.49 -13.42 8.80 -34.44 -0.30 -13.73 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.48 -8.50 4.95 -223.97 -1.11 -9.60 16 14 C 0.03 0.53 5.60 -1.86 -0.01 0.51 16 15 C -0.18 -2.45 6.95 -26.14 -0.18 -2.63 16 16 C 0.37 5.50 8.01 -27.88 -0.22 5.27 16 17 O -0.46 -7.81 17.99 6.00 0.11 -7.71 16 18 C -0.03 -0.48 6.32 -4.01 -0.03 -0.51 16 19 H 0.06 0.93 6.39 -51.92 -0.33 0.60 16 20 H 0.04 0.58 6.27 -51.93 -0.33 0.26 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.02 0.51 7.21 -51.93 -0.37 0.14 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.10 1.73 7.75 -51.93 -0.40 1.32 16 26 H 0.05 0.80 5.42 -51.93 -0.28 0.52 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.06 6.01 -51.93 -0.31 0.75 16 30 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 246.99 15.07 3.72 3.72 Total: -1.00 -29.95 246.99 -6.48 -36.43 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.10 Total: -3.11 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.81 Total: -10.45 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.37 Total: -35.53 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.95 -6.48 -36.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781675.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.508 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds