Wall clock time and date at job start Mon Mar 30 2020 20:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.51945 * 1 3 3 H 1.10817 * 107.72041 * 2 1 4 4 N 1.46985 * 112.27919 * 242.36094 * 2 1 3 5 5 C 1.33265 * 123.29077 * 309.52098 * 4 2 1 6 6 O 1.22355 * 117.54105 * 159.28158 * 5 4 2 7 7 C 1.50706 * 124.06233 * 339.23279 * 5 4 2 8 8 C 1.52996 * 108.77098 * 308.24057 * 7 5 4 9 9 C 1.51636 * 110.82762 * 83.51781 * 8 7 5 10 10 C 1.51208 * 114.48989 * 284.63162 * 9 8 7 11 11 H 1.09601 * 108.72297 * 304.97266 * 10 9 8 12 12 C 1.51009 * 109.05995 * 187.25234 * 10 9 8 13 13 H 1.07999 * 120.00344 * 238.07634 * 12 10 9 14 14 C 1.37885 * 119.99691 * 58.07093 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 H 1.09000 * 109.47494 * 302.01612 * 1 2 3 21 21 H 1.09004 * 109.47455 * 62.01442 * 1 2 3 22 22 H 1.08997 * 109.47334 * 182.01704 * 1 2 3 23 23 H 0.97768 * 118.50432 * 129.45319 * 4 2 1 24 24 H 1.08528 * 111.43231 * 70.17404 * 7 5 4 25 25 H 1.09729 * 109.14217 * 189.75905 * 7 5 4 26 26 H 1.09062 * 109.19132 * 203.88962 * 8 7 5 27 27 H 1.09034 * 109.21530 * 323.09140 * 8 7 5 28 28 H 1.09883 * 107.50132 * 164.91452 * 9 8 7 29 29 H 1.08594 * 109.26366 * 49.17804 * 9 8 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5194 0.0000 0.0000 3 1 1.8567 1.0556 0.0000 4 7 2.0767 -0.6310 -1.2049 5 6 1.6981 -1.8309 -1.6440 6 8 1.9129 -2.0971 -2.8187 7 6 1.0270 -2.8711 -0.7845 8 6 1.8629 -3.0789 0.4800 9 6 1.5292 -2.0320 1.5250 10 6 2.1051 -0.6620 1.2459 11 1 3.1888 -0.7564 1.1125 12 6 1.8537 0.2307 2.4377 13 1 1.2994 1.1496 2.3168 14 6 2.3319 -0.1276 3.6804 15 7 2.1125 0.6496 4.7184 16 14 3.2911 -1.7168 3.8894 17 1 2.3529 -2.8234 4.2061 18 1 4.0156 -2.0269 2.6307 19 1 4.2676 -1.5633 4.9976 20 1 -0.3634 0.5448 0.8713 21 1 -0.3634 0.4822 -0.9075 22 1 -0.3634 -1.0270 0.0362 23 1 2.7588 -0.1475 -1.7118 24 1 0.0147 -2.5781 -0.5249 25 1 0.9811 -3.8186 -1.3361 26 1 1.6582 -4.0701 0.8862 27 1 2.9210 -3.0093 0.2261 28 1 1.9389 -2.3796 2.4835 29 1 0.4512 -1.9748 1.6433 30 1 2.4486 0.3973 5.5927 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917242.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:40 Heat of formation + Delta-G solvation = -68.541036 kcal Electronic energy + Delta-G solvation = -13284.809391 eV Core-core repulsion = 11078.654738 eV Total energy + Delta-G solvation = -2206.154653 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.14625 -38.24778 -35.11758 -34.57668 -32.50298 -30.13557 -27.52290 -25.10568 -24.01524 -21.16559 -19.95865 -18.80961 -18.32144 -17.00739 -16.86305 -16.02310 -15.13843 -15.05382 -14.78070 -14.53462 -14.15525 -13.64850 -13.13960 -13.06725 -12.80759 -12.60466 -12.20265 -12.04882 -11.77167 -11.22528 -11.15735 -10.97238 -10.75884 -10.63420 -9.87352 -8.26154 -6.29156 1.31484 1.39492 1.47435 1.56732 2.34004 2.44206 3.09355 3.67551 3.90357 3.94024 4.09179 4.38360 4.43376 4.51817 4.67918 4.78941 4.84474 4.99765 5.07890 5.21100 5.27220 5.38757 5.41245 5.63791 5.73815 5.93037 6.29390 6.52316 6.78786 7.22822 7.36535 8.89369 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047559 B = 0.013678 C = 0.011896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.601750 B = 2046.521218 C = 2353.140625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 H 0.080 0.920 4 N -0.712 5.712 5 C 0.519 3.481 6 O -0.615 6.615 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.122 4.122 10 C 0.008 3.992 11 H 0.018 0.982 12 C -0.506 4.506 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.947 5.947 16 Si 0.944 3.056 17 H -0.265 1.265 18 H -0.253 1.253 19 H -0.310 1.310 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.402 0.598 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -6.166 -7.581 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.098 0.902 4 N -0.362 5.362 5 C 0.308 3.692 6 O -0.499 6.499 7 C -0.168 4.168 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.012 4.012 11 H 0.036 0.964 12 C -0.545 4.545 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.177 1.177 19 H -0.239 1.239 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.238 0.762 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.141 -6.371 -7.857 10.340 hybrid contribution 0.889 -0.035 0.665 1.111 sum -1.252 -6.406 -7.193 9.713 Atomic orbital electron populations 1.21864 0.93482 1.03187 1.02352 1.21035 0.94779 0.96327 0.82381 0.90155 1.46082 1.42919 1.18191 1.28980 1.21158 0.77714 0.83120 0.87201 1.90954 1.59034 1.81077 1.18884 1.21886 1.00969 0.97896 0.96012 1.21302 0.99375 1.00050 0.94283 1.21438 1.02110 0.95386 0.96969 1.19174 0.95871 0.92839 0.93284 0.96377 1.21311 1.34292 1.06734 0.92162 0.93236 1.25763 0.96793 0.99777 0.95856 1.70024 1.48209 1.39890 1.00588 0.85904 0.78553 0.80726 0.77448 1.19191 1.17682 1.23894 0.91219 0.91735 0.91275 0.76180 0.86813 0.87500 0.89071 0.93012 0.95420 0.90905 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.57 71.63 0.61 -3.92 16 2 C 0.16 5.33 2.62 44.47 0.12 5.45 16 3 H 0.08 2.74 8.13 -1.41 -0.01 2.73 16 4 N -0.71 -22.28 5.05 -442.38 -2.23 -24.51 16 5 C 0.52 17.01 6.67 87.89 0.59 17.60 16 6 O -0.62 -24.14 17.86 -6.49 -0.12 -24.26 16 7 C -0.13 -3.45 5.35 29.85 0.16 -3.29 16 8 C -0.11 -3.30 5.59 30.15 0.17 -3.13 16 9 C -0.12 -4.44 3.74 29.56 0.11 -4.33 16 10 C 0.01 0.33 1.37 -12.11 -0.02 0.31 16 11 H 0.02 0.79 7.19 -2.07 -0.01 0.77 16 12 C -0.51 -25.76 8.56 25.70 0.22 -25.54 16 13 H 0.05 2.74 7.66 -2.91 -0.02 2.72 16 14 C 0.02 0.83 5.44 84.66 0.46 1.30 16 15 N -0.95 -56.18 13.96 21.45 0.30 -55.88 16 16 Si 0.94 42.96 24.33 68.60 1.67 44.63 16 17 H -0.27 -11.40 6.85 99.48 0.68 -10.72 16 18 H -0.25 -10.78 6.47 99.48 0.64 -10.13 16 19 H -0.31 -14.52 7.11 99.48 0.71 -13.82 16 20 H 0.07 2.30 7.50 -2.39 -0.02 2.29 16 21 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.07 1.90 4.22 -2.39 -0.01 1.89 16 23 H 0.40 11.56 8.90 -92.13 -0.82 10.74 16 24 H 0.11 2.70 5.68 -2.64 -0.01 2.68 16 25 H 0.11 2.53 8.15 -2.00 -0.02 2.51 16 26 H 0.09 2.23 8.15 -2.35 -0.02 2.21 16 27 H 0.05 1.62 7.89 -2.37 -0.02 1.60 16 28 H 0.03 1.11 2.72 -1.92 -0.01 1.11 16 29 H 0.07 2.52 6.72 -2.60 -0.02 2.50 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -63.04 228.89 2.29 -60.74 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.25 Total: 14.84 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 2.42 Total: -15.56 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.93 Total: -80.39 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.12 Total: -24.26 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.67 Total: 44.63 kcal Total: -63.04 2.29 -60.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917242.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.799 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds