Wall clock time and date at job start Mon Mar 30 2020 20:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00197 * 2 1 4 4 C 1.50699 * 109.46985 * 72.26541 * 3 2 1 5 5 O 1.20764 * 119.99799 * 120.54521 * 4 3 2 6 6 C 1.46903 * 110.99722 * 236.04495 * 2 1 3 7 7 C 1.53000 * 109.47361 * 289.19703 * 6 2 1 8 8 C 1.50697 * 115.54868 * 305.54996 * 7 6 2 9 9 H 1.08003 * 120.00209 * 125.26640 * 8 7 6 10 10 C 1.37876 * 120.00428 * 305.26453 * 8 7 6 11 11 N 1.31511 * 120.00575 * 182.84854 * 10 8 7 12 12 Si 1.86801 * 119.99588 * 2.84316 * 10 8 7 13 13 H 1.48508 * 109.46990 * 95.51204 * 12 10 8 14 14 H 1.48497 * 109.47279 * 215.51209 * 12 10 8 15 15 H 1.48501 * 109.47206 * 335.51757 * 12 10 8 16 16 C 1.52999 * 117.49921 * 159.87754 * 7 6 2 17 17 C 1.53008 * 117.49762 * 91.21536 * 7 6 2 18 18 H 1.09003 * 109.47354 * 65.23739 * 1 2 3 19 19 H 1.08991 * 109.47660 * 185.23687 * 1 2 3 20 20 H 1.08998 * 109.47419 * 305.24369 * 1 2 3 21 21 H 1.09004 * 109.46601 * 312.26451 * 3 2 1 22 22 H 1.09003 * 109.46964 * 192.26395 * 3 2 1 23 23 H 1.07997 * 120.00193 * 300.26726 * 4 3 2 24 24 H 1.08999 * 109.46911 * 49.19914 * 6 2 1 25 25 H 1.08998 * 109.46658 * 169.19855 * 6 2 1 26 26 H 0.96998 * 119.99856 * 180.02562 * 11 10 8 27 27 H 1.08997 * 117.50036 * 359.97438 * 16 7 6 28 28 H 1.09000 * 117.49745 * 145.02854 * 16 7 6 29 29 H 1.08997 * 117.49753 * 214.97867 * 17 7 6 30 30 H 1.08998 * 117.49640 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7715 1.9955 1.3533 5 8 2.7126 2.3865 2.0011 6 6 1.9954 -0.7660 -1.1376 7 6 1.7353 -2.2569 -0.9127 8 6 2.2522 -2.8180 0.3869 9 1 1.5822 -3.3394 1.0545 10 6 3.5805 -2.6657 0.7238 11 7 4.0440 -3.2035 1.8308 12 14 4.7218 -1.6956 -0.3923 13 1 4.8160 -0.2952 0.0928 14 1 6.0711 -2.3156 -0.3799 15 1 4.1855 -1.7047 -1.7771 16 6 1.7645 -3.1719 -2.1386 17 6 0.4316 -2.8377 -1.4641 18 1 -0.3634 0.4305 -0.9332 19 1 -0.3634 -1.0233 0.0938 20 1 -0.3634 0.5930 0.8393 21 1 1.4804 1.9583 -0.7606 22 1 3.0632 1.3507 -0.2183 23 1 0.7689 2.0971 1.7418 24 1 1.4986 -0.4446 -2.0530 25 1 3.0680 -0.5937 -1.2264 26 1 4.9784 -3.0960 2.0680 27 1 1.9685 -2.7118 -3.1053 28 1 2.1571 -4.1799 -2.0049 29 1 -0.0520 -3.6259 -0.8870 30 1 -0.2410 -2.1575 -1.9866 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714669453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:55 Heat of formation + Delta-G solvation = 12.150362 kcal Electronic energy + Delta-G solvation = -12996.415416 eV Core-core repulsion = 10793.759805 eV Total energy + Delta-G solvation = -2202.655611 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.97659 -37.73620 -35.17967 -31.99969 -28.46174 -27.48927 -25.36492 -22.87289 -21.46080 -20.49757 -18.93470 -16.36860 -16.26324 -15.69218 -14.93933 -14.64053 -14.10468 -13.67074 -13.29217 -12.87875 -12.82072 -12.07361 -11.78719 -11.56799 -11.35898 -10.85633 -10.60060 -10.29086 -9.96839 -9.53579 -9.29307 -8.98272 -8.57895 -8.33929 -7.71951 -5.98498 -3.94666 2.21444 3.35841 3.38425 3.45151 4.35940 4.51008 4.62177 4.97518 5.18348 5.38379 5.44925 5.70589 5.73600 5.88432 5.94134 6.04483 6.11711 6.20907 6.34604 6.47323 6.58962 6.73422 6.99798 7.14918 7.52157 7.53445 7.68380 7.88110 8.61738 9.03432 9.66812 11.14657 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.017604 C = 0.013099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.190974 B = 1590.159351 C = 2137.106699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.503 5.503 3 C -0.020 4.020 4 C 0.364 3.636 5 O -0.463 6.463 6 C 0.083 3.917 7 C 0.013 3.987 8 C -0.458 4.458 9 H 0.074 0.926 10 C 0.084 3.916 11 N -0.900 5.900 12 Si 0.877 3.123 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.260 1.260 16 C -0.202 4.202 17 C -0.187 4.187 18 H 0.016 0.984 19 H 0.084 0.916 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.019 0.981 25 H 0.068 0.932 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 7.631 -6.477 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.228 5.228 3 C -0.149 4.149 4 C 0.218 3.782 5 O -0.332 6.332 6 C -0.043 4.043 7 C 0.012 3.988 8 C -0.496 4.496 9 H 0.092 0.908 10 C -0.118 4.118 11 N -0.538 5.538 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.186 1.186 16 C -0.241 4.241 17 C -0.224 4.224 18 H 0.034 0.966 19 H 0.103 0.897 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.793 7.610 -5.550 11.057 hybrid contribution 0.324 0.837 -1.427 1.686 sum -5.469 8.447 -6.976 12.244 Atomic orbital electron populations 1.22506 0.87422 1.03544 0.98782 1.61723 1.07574 1.08616 1.44903 1.23076 1.02761 0.91892 0.97158 1.25846 0.93487 0.72209 0.86624 1.90379 1.47403 1.37935 1.57505 1.22197 0.98875 0.94701 0.88563 1.19317 0.96519 0.88668 0.94328 1.20099 0.94437 1.34297 1.00719 0.90771 1.24802 0.97828 0.94612 0.94512 1.69870 1.15107 1.44863 1.24002 0.87087 0.79660 0.80601 0.81861 1.20406 1.22738 1.18553 1.23124 1.01692 1.02186 0.97055 1.22791 0.90723 1.03854 1.05078 0.96557 0.89721 0.92211 0.92351 0.89221 0.89293 0.96337 0.91455 0.92767 0.91647 0.89419 0.89831 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.08 60.06 0.55 0.94 16 2 N -0.50 -9.64 4.35 -244.37 -1.06 -10.71 16 3 C -0.02 -0.33 5.56 -4.98 -0.03 -0.36 16 4 C 0.36 5.77 10.93 36.01 0.39 6.16 16 5 O -0.46 -9.23 17.90 6.00 0.11 -9.12 16 6 C 0.08 1.72 3.88 -3.82 -0.01 1.70 16 7 C 0.01 0.29 0.59 -155.66 -0.09 0.20 16 8 C -0.46 -12.65 9.18 -34.44 -0.32 -12.97 16 9 H 0.07 2.25 8.06 -52.48 -0.42 1.83 16 10 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 11 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 12 Si 0.88 22.17 24.84 -169.99 -4.22 17.94 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 15 H -0.26 -6.08 5.87 56.52 0.33 -5.75 16 16 C -0.20 -4.19 9.79 -26.69 -0.26 -4.45 16 17 C -0.19 -3.64 8.44 -26.68 -0.23 -3.87 16 18 H 0.02 0.22 8.10 -51.93 -0.42 -0.20 16 19 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 20 H 0.06 0.77 6.87 -51.93 -0.36 0.41 16 21 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 22 H 0.09 1.65 7.71 -51.93 -0.40 1.25 16 23 H 0.09 1.07 7.23 -52.49 -0.38 0.69 16 24 H 0.02 0.34 7.98 -51.93 -0.41 -0.08 16 25 H 0.07 1.49 2.81 -51.93 -0.15 1.34 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 248.13 15.07 3.74 3.74 Total: -1.00 -32.02 248.13 -4.95 -36.96 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.19 Total: -1.37 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.10 Total: -10.30 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.29 Total: -37.85 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.11 Total: -9.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.22 Total: 17.94 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.02 -4.95 -36.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714669453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.115 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds