Wall clock time and date at job start Mon Mar 30 2020 20:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00197 * 2 1 4 4 C 1.50699 * 109.46985 * 72.26541 * 3 2 1 5 5 O 1.20764 * 119.99799 * 120.54521 * 4 3 2 6 6 C 1.46903 * 110.99722 * 236.04495 * 2 1 3 7 7 C 1.53000 * 109.47361 * 289.19703 * 6 2 1 8 8 C 1.50697 * 115.54868 * 305.54996 * 7 6 2 9 9 H 1.08003 * 120.00209 * 125.26640 * 8 7 6 10 10 C 1.37876 * 120.00428 * 305.26453 * 8 7 6 11 11 N 1.31511 * 120.00575 * 182.84854 * 10 8 7 12 12 Si 1.86801 * 119.99588 * 2.84316 * 10 8 7 13 13 H 1.48508 * 109.46990 * 95.51204 * 12 10 8 14 14 H 1.48497 * 109.47279 * 215.51209 * 12 10 8 15 15 H 1.48501 * 109.47206 * 335.51757 * 12 10 8 16 16 C 1.52999 * 117.49921 * 159.87754 * 7 6 2 17 17 C 1.53008 * 117.49762 * 91.21536 * 7 6 2 18 18 H 1.09003 * 109.47354 * 65.23739 * 1 2 3 19 19 H 1.08991 * 109.47660 * 185.23687 * 1 2 3 20 20 H 1.08998 * 109.47419 * 305.24369 * 1 2 3 21 21 H 1.09004 * 109.46601 * 312.26451 * 3 2 1 22 22 H 1.09003 * 109.46964 * 192.26395 * 3 2 1 23 23 H 1.07997 * 120.00193 * 300.26726 * 4 3 2 24 24 H 1.08999 * 109.46911 * 49.19914 * 6 2 1 25 25 H 1.08998 * 109.46658 * 169.19855 * 6 2 1 26 26 H 0.96998 * 119.99856 * 180.02562 * 11 10 8 27 27 H 1.08997 * 117.50036 * 359.97438 * 16 7 6 28 28 H 1.09000 * 117.49745 * 145.02854 * 16 7 6 29 29 H 1.08997 * 117.49753 * 214.97867 * 17 7 6 30 30 H 1.08998 * 117.49640 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7715 1.9955 1.3533 5 8 2.7126 2.3865 2.0011 6 6 1.9954 -0.7660 -1.1376 7 6 1.7353 -2.2569 -0.9127 8 6 2.2522 -2.8180 0.3869 9 1 1.5822 -3.3394 1.0545 10 6 3.5805 -2.6657 0.7238 11 7 4.0440 -3.2035 1.8308 12 14 4.7218 -1.6956 -0.3923 13 1 4.8160 -0.2952 0.0928 14 1 6.0711 -2.3156 -0.3799 15 1 4.1855 -1.7047 -1.7771 16 6 1.7645 -3.1719 -2.1386 17 6 0.4316 -2.8377 -1.4641 18 1 -0.3634 0.4305 -0.9332 19 1 -0.3634 -1.0233 0.0938 20 1 -0.3634 0.5930 0.8393 21 1 1.4804 1.9583 -0.7606 22 1 3.0632 1.3507 -0.2183 23 1 0.7689 2.0971 1.7418 24 1 1.4986 -0.4446 -2.0530 25 1 3.0680 -0.5937 -1.2264 26 1 4.9784 -3.0960 2.0680 27 1 1.9685 -2.7118 -3.1053 28 1 2.1571 -4.1799 -2.0049 29 1 -0.0520 -3.6259 -0.8870 30 1 -0.2410 -2.1575 -1.9866 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714669453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:54 Heat of formation + Delta-G solvation = -11.768666 kcal Electronic energy + Delta-G solvation = -12997.452623 eV Core-core repulsion = 10793.759805 eV Total energy + Delta-G solvation = -2203.692818 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.34194 -39.28271 -36.67333 -34.16510 -29.84426 -28.87453 -27.34975 -24.29572 -23.05465 -21.75381 -20.80293 -18.26927 -17.56005 -17.32038 -16.43308 -16.16913 -15.57336 -15.29846 -14.85791 -14.76960 -14.23890 -13.69332 -13.41912 -12.98660 -12.80429 -12.55219 -12.31632 -12.04008 -11.65219 -11.38063 -10.88564 -10.74255 -10.47464 -10.19641 -9.02108 -8.20586 -6.18361 0.97666 1.32496 1.35958 1.44552 2.40528 2.94786 3.20676 3.46091 3.51399 3.96821 4.15485 4.27729 4.36780 4.51235 4.56102 4.64644 4.77214 4.84801 4.89787 4.95952 5.13455 5.27379 5.37255 5.57147 5.78564 6.17138 6.27765 6.42844 6.44700 6.83903 7.46257 8.96486 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.017604 C = 0.013099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.190974 B = 1590.159351 C = 2137.106699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C -0.020 4.020 4 C 0.369 3.631 5 O -0.513 6.513 6 C 0.089 3.911 7 C -0.020 4.020 8 C -0.446 4.446 9 H 0.027 0.973 10 C 0.024 3.976 11 N -0.957 5.957 12 Si 0.936 3.064 13 H -0.283 1.283 14 H -0.311 1.311 15 H -0.224 1.224 16 C -0.198 4.198 17 C -0.161 4.161 18 H 0.047 0.953 19 H 0.063 0.937 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.062 0.938 23 H 0.139 0.861 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.259 0.741 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 9.331 -9.014 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.149 4.149 4 C 0.227 3.773 5 O -0.385 6.385 6 C -0.038 4.038 7 C -0.021 4.021 8 C -0.483 4.483 9 H 0.046 0.954 10 C -0.171 4.171 11 N -0.599 5.599 12 Si 0.765 3.235 13 H -0.210 1.210 14 H -0.240 1.240 15 H -0.148 1.148 16 C -0.236 4.236 17 C -0.197 4.197 18 H 0.065 0.935 19 H 0.082 0.918 20 H 0.102 0.898 21 H 0.121 0.879 22 H 0.080 0.920 23 H 0.155 0.845 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.625 9.311 -8.130 14.523 hybrid contribution 0.723 0.248 -0.607 0.976 sum -6.902 9.558 -8.737 14.674 Atomic orbital electron populations 1.22550 0.85146 1.03058 1.01448 1.61588 1.09914 1.10111 1.45073 1.23087 1.01599 0.91364 0.98803 1.26485 0.94676 0.70217 0.85874 1.90381 1.49257 1.40347 1.58515 1.22002 0.98202 0.92953 0.90608 1.19268 0.99647 0.90532 0.92633 1.20294 0.93431 1.32533 1.02090 0.95425 1.25567 0.99717 0.95993 0.95864 1.70037 1.15271 1.47836 1.26731 0.86160 0.76999 0.78373 0.82017 1.21023 1.23996 1.14763 1.23135 1.02294 1.00926 0.97243 1.22817 0.90168 1.03247 1.03516 0.93493 0.91831 0.89838 0.87878 0.91979 0.84478 0.92883 0.93421 0.93251 0.88612 0.91035 0.90915 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.08 127.69 1.16 1.82 16 2 N -0.54 -19.05 4.35 -927.05 -4.03 -23.08 16 3 C -0.02 -0.60 5.56 85.56 0.48 -0.12 16 4 C 0.37 10.76 10.93 71.24 0.78 11.54 16 5 O -0.51 -20.07 17.90 -1.46 -0.03 -20.10 16 6 C 0.09 3.36 3.88 86.30 0.34 3.69 16 7 C -0.02 -0.84 0.59 -52.93 -0.03 -0.87 16 8 C -0.45 -25.01 9.18 25.60 0.24 -24.77 16 9 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 10 C 0.02 1.45 5.47 84.65 0.46 1.91 16 11 N -0.96 -62.00 13.96 21.45 0.30 -61.70 16 12 Si 0.94 46.37 24.84 68.60 1.70 48.08 16 13 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 15 H -0.22 -9.69 5.87 99.48 0.58 -9.10 16 16 C -0.20 -7.54 9.79 30.62 0.30 -7.24 16 17 C -0.16 -5.70 8.44 30.62 0.26 -5.44 16 18 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 19 H 0.06 1.95 6.39 -2.39 -0.02 1.93 16 20 H 0.08 1.76 6.87 -2.39 -0.02 1.74 16 21 H 0.10 2.12 8.05 -2.38 -0.02 2.10 16 22 H 0.06 2.17 7.71 -2.39 -0.02 2.16 16 23 H 0.14 2.68 7.23 -2.91 -0.02 2.65 16 24 H 0.05 1.62 7.98 -2.39 -0.02 1.61 16 25 H 0.05 1.96 2.81 -2.39 -0.01 1.95 16 26 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -73.09 248.13 2.91 -70.19 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.99 Total: 6.10 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 3.97 Total: -19.49 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.73 Total: -84.79 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.03 Total: -20.10 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.70 Total: 48.08 kcal Total: -73.09 2.91 -70.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714669453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.418 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds