Wall clock time and date at job start Mon Mar 30 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.73605 * 313.75499 * 4 3 2 6 6 C 1.53502 * 113.46473 * 182.94305 * 4 3 2 7 7 C 1.53497 * 83.34015 * 219.14961 * 6 4 3 8 8 N 1.47060 * 113.47140 * 84.50631 * 4 3 2 9 9 C 1.34773 * 136.05538 * 321.86222 * 8 4 3 10 10 O 1.21694 * 120.00380 * 0.02562 * 9 8 4 11 11 C 1.46377 * 120.00142 * 180.02562 * 9 8 4 12 12 H 1.07996 * 119.99823 * 359.97438 * 11 9 8 13 13 C 1.40046 * 120.00059 * 180.02562 * 11 9 8 14 14 N 1.30680 * 120.00479 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00183 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47210 * 119.99657 * 15 13 11 18 18 H 1.48496 * 109.47543 * 239.99888 * 15 13 11 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.08999 * 114.20520 * 332.73214 * 6 4 3 27 27 H 1.08998 * 114.20944 * 105.56251 * 6 4 3 28 28 H 1.09001 * 113.47089 * 271.28465 * 7 6 4 29 29 H 1.09007 * 113.51884 * 140.85613 * 7 6 4 30 30 H 0.96993 * 120.00097 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9915 0.7470 0.7252 6 6 4.1814 2.8485 0.0716 7 6 5.1946 2.2647 -0.9228 8 7 4.1552 1.3133 -1.3436 9 6 3.8664 0.6253 -2.4660 10 8 2.8972 -0.1099 -2.4966 11 6 4.7185 0.7625 -3.6482 12 1 5.5784 1.4153 -3.6212 13 6 4.4181 0.0480 -4.8146 14 7 3.3773 -0.7416 -4.8475 15 14 5.5051 0.2235 -6.3236 16 1 6.6107 1.1703 -6.0297 17 1 6.0713 -1.1016 -6.6827 18 1 4.6981 0.7407 -7.4577 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.5486 3.6328 -0.3438 27 1 4.6044 3.1026 1.0435 28 1 6.0496 1.7891 -0.4424 29 1 5.4867 2.9635 -1.7068 30 1 3.1696 -1.2367 -5.6553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:12 Heat of formation + Delta-G solvation = -15.965734 kcal Electronic energy + Delta-G solvation = -12835.022115 eV Core-core repulsion = 10631.147299 eV Total energy + Delta-G solvation = -2203.874816 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16194 -35.68867 -33.78022 -32.43849 -28.80286 -27.57457 -25.88846 -22.97210 -21.36308 -20.41659 -18.50617 -16.66477 -15.50000 -14.93080 -14.50180 -14.26832 -13.57106 -12.90662 -12.54026 -12.22186 -11.77858 -11.55282 -11.48957 -11.28565 -11.08287 -10.93285 -10.64090 -10.43134 -10.36523 -10.17580 -9.70355 -9.39302 -8.85735 -7.47317 -7.19245 -6.18109 -4.62888 3.12512 3.20705 3.25288 4.06171 4.44233 4.57190 5.03886 5.39448 5.66318 5.73063 5.80225 5.88549 6.02357 6.06164 6.09168 6.15856 6.27306 6.36032 6.48600 6.53684 6.67857 6.84365 6.89679 7.11094 7.39821 7.47753 8.16398 8.52096 9.03240 9.67109 10.59477 10.80535 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.011727 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.087172 B = 2386.997781 C = 3018.316313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C -0.107 4.107 4 C 0.129 3.871 5 H 0.066 0.934 6 C -0.158 4.158 7 C 0.109 3.891 8 N -0.659 5.659 9 C 0.584 3.416 10 O -0.563 6.563 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 H 0.050 0.950 20 H 0.045 0.955 21 H 0.038 0.962 22 H 0.114 0.886 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 5.003 7.029 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C -0.145 4.145 4 C 0.025 3.975 5 H 0.084 0.916 6 C -0.196 4.196 7 C -0.016 4.016 8 N -0.400 5.400 9 C 0.391 3.609 10 O -0.446 6.446 11 C -0.573 4.573 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.201 1.201 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.132 0.868 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.371 4.318 6.670 7.955 hybrid contribution 0.665 0.106 -0.662 0.944 sum 1.036 4.424 6.008 7.533 Atomic orbital electron populations 1.21671 0.97192 1.00564 1.00406 1.21912 0.94815 0.97289 1.04249 1.21606 0.94630 0.97634 1.00678 1.22342 0.94068 0.93886 0.87232 0.91597 1.23523 0.99468 0.97332 0.99252 1.22446 0.92336 0.91320 0.95542 1.50091 1.29467 1.49641 1.10830 1.17939 0.85103 0.77804 0.80014 1.90465 1.31192 1.40935 1.81999 1.20846 1.12302 1.28456 0.95739 0.91532 1.25704 0.94656 0.93498 0.99358 1.70021 1.22606 1.19874 1.27237 0.86316 0.80505 0.78667 0.81291 1.18809 1.20153 1.20138 0.93072 0.93597 0.94303 0.86830 0.94085 0.92987 0.91794 0.89689 0.91245 0.92288 0.91771 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.15 0.37 -2.08 16 2 C -0.15 -2.91 5.82 -26.74 -0.16 -3.07 16 3 C -0.11 -2.03 4.82 -26.73 -0.13 -2.16 16 4 C 0.13 2.47 3.96 -72.40 -0.29 2.18 16 5 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.16 -2.44 8.03 -26.21 -0.21 -2.65 16 7 C 0.11 1.98 8.31 -8.52 -0.07 1.91 16 8 N -0.66 -15.46 3.57 -179.13 -0.64 -16.10 16 9 C 0.58 16.88 7.90 -12.99 -0.10 16.78 16 10 O -0.56 -17.81 12.29 5.19 0.06 -17.75 16 11 C -0.54 -15.45 9.38 -35.63 -0.33 -15.78 16 12 H 0.07 1.80 7.76 -52.49 -0.41 1.39 16 13 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 14 N -0.77 -23.04 11.83 55.55 0.66 -22.38 16 15 Si 0.91 20.38 29.56 -169.99 -5.02 15.35 16 16 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.11 2.86 4.88 -51.93 -0.25 2.60 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 252.65 15.07 3.81 3.81 Total: -1.00 -32.70 252.65 -6.59 -39.29 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.44 Total: 0.29 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.02 Total: -2.51 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.02 Total: -38.48 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.06 Total: -17.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.70 -6.59 -39.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.326 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds