Wall clock time and date at job start Mon Mar 30 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.73605 * 313.75499 * 4 3 2 6 6 C 1.53502 * 113.46473 * 182.94305 * 4 3 2 7 7 C 1.53497 * 83.34015 * 219.14961 * 6 4 3 8 8 N 1.47060 * 113.47140 * 84.50631 * 4 3 2 9 9 C 1.34773 * 136.05538 * 321.86222 * 8 4 3 10 10 O 1.21694 * 120.00380 * 0.02562 * 9 8 4 11 11 C 1.46377 * 120.00142 * 180.02562 * 9 8 4 12 12 H 1.07996 * 119.99823 * 359.97438 * 11 9 8 13 13 C 1.40046 * 120.00059 * 180.02562 * 11 9 8 14 14 N 1.30680 * 120.00479 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00183 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47210 * 119.99657 * 15 13 11 18 18 H 1.48496 * 109.47543 * 239.99888 * 15 13 11 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.08999 * 114.20520 * 332.73214 * 6 4 3 27 27 H 1.08998 * 114.20944 * 105.56251 * 6 4 3 28 28 H 1.09001 * 113.47089 * 271.28465 * 7 6 4 29 29 H 1.09007 * 113.51884 * 140.85613 * 7 6 4 30 30 H 0.96993 * 120.00097 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9915 0.7470 0.7252 6 6 4.1814 2.8485 0.0716 7 6 5.1946 2.2647 -0.9228 8 7 4.1552 1.3133 -1.3436 9 6 3.8664 0.6253 -2.4660 10 8 2.8972 -0.1099 -2.4966 11 6 4.7185 0.7625 -3.6482 12 1 5.5784 1.4153 -3.6212 13 6 4.4181 0.0480 -4.8146 14 7 3.3773 -0.7416 -4.8475 15 14 5.5051 0.2235 -6.3236 16 1 6.6107 1.1703 -6.0297 17 1 6.0713 -1.1016 -6.6827 18 1 4.6981 0.7407 -7.4577 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.5486 3.6328 -0.3438 27 1 4.6044 3.1026 1.0435 28 1 6.0496 1.7891 -0.4424 29 1 5.4867 2.9635 -1.7068 30 1 3.1696 -1.2367 -5.6553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:12 Heat of formation + Delta-G solvation = -38.267497 kcal Electronic energy + Delta-G solvation = -12835.989192 eV Core-core repulsion = 10631.147299 eV Total energy + Delta-G solvation = -2204.841893 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.79288 -37.75242 -35.32154 -34.58370 -30.60656 -29.07738 -27.93348 -24.45440 -23.11079 -21.93766 -20.29705 -18.54183 -17.56400 -16.49768 -16.17423 -16.03895 -15.32325 -14.40151 -14.29954 -14.02811 -13.44984 -13.22578 -13.01693 -12.87119 -12.80215 -12.58804 -12.48586 -12.07768 -12.03280 -11.81949 -11.31444 -10.94986 -10.88683 -9.59773 -9.03816 -8.27418 -6.83629 1.36520 1.36908 1.54306 2.21113 2.46973 2.76992 3.59653 3.64168 4.07109 4.23687 4.28073 4.36783 4.59186 4.62484 4.71123 4.80187 4.85386 4.96446 5.01801 5.10555 5.17050 5.30378 5.35192 5.45248 5.58057 5.75665 6.04887 6.53075 6.87654 7.71885 8.51301 8.71664 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.011727 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.087172 B = 2386.997781 C = 3018.316313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C -0.102 4.102 4 C 0.116 3.884 5 H 0.078 0.922 6 C -0.124 4.124 7 C 0.101 3.899 8 N -0.681 5.681 9 C 0.563 3.437 10 O -0.607 6.607 11 C -0.568 4.568 12 H 0.076 0.924 13 C 0.030 3.970 14 N -0.822 5.822 15 Si 0.995 3.005 16 H -0.250 1.250 17 H -0.267 1.267 18 H -0.267 1.267 19 H 0.031 0.969 20 H 0.049 0.951 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 6.543 8.230 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.185 4.185 3 C -0.140 4.140 4 C 0.013 3.987 5 H 0.096 0.904 6 C -0.162 4.162 7 C -0.023 4.023 8 N -0.421 5.421 9 C 0.370 3.630 10 O -0.493 6.493 11 C -0.605 4.605 12 H 0.094 0.906 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.815 3.185 16 H -0.173 1.173 17 H -0.192 1.192 18 H -0.192 1.192 19 H 0.051 0.949 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.600 5.900 7.925 10.009 hybrid contribution 0.283 -0.363 -0.911 1.021 sum 1.883 5.537 7.015 9.133 Atomic orbital electron populations 1.21618 0.95336 1.01170 1.01124 1.21813 0.96620 0.97812 1.02220 1.21569 0.94770 0.96737 1.00875 1.22738 0.94295 0.96684 0.85030 0.90420 1.23386 0.97377 0.94808 1.00616 1.22797 0.92758 0.90421 0.96306 1.50018 1.31600 1.49145 1.11326 1.18213 0.84861 0.78024 0.81901 1.90450 1.32633 1.42735 1.83517 1.21331 1.12969 1.29299 0.96889 0.90562 1.26919 0.96071 0.92410 1.03075 1.70184 1.25022 1.21213 1.28716 0.85012 0.78321 0.79180 0.76026 1.17318 1.19206 1.19193 0.94942 0.93166 0.90821 0.92422 0.92338 0.88767 0.95209 0.89474 0.86399 0.90233 0.91937 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.91 71.98 0.71 -3.92 16 2 C -0.15 -5.93 5.82 30.59 0.18 -5.75 16 3 C -0.10 -3.73 4.82 30.59 0.15 -3.59 16 4 C 0.12 4.23 3.96 41.79 0.17 4.40 16 5 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 6 C -0.12 -3.38 8.03 30.93 0.25 -3.13 16 7 C 0.10 3.47 8.31 83.18 0.69 4.16 16 8 N -0.68 -32.11 3.57 -838.87 -2.99 -35.10 16 9 C 0.56 33.85 7.90 86.36 0.68 34.53 16 10 O -0.61 -40.65 12.29 -4.33 -0.05 -40.70 16 11 C -0.57 -33.57 9.38 24.83 0.23 -33.34 16 12 H 0.08 4.16 7.76 -2.91 -0.02 4.14 16 13 C 0.03 1.71 5.50 85.30 0.47 2.18 16 14 N -0.82 -51.28 11.83 21.84 0.26 -51.02 16 15 Si 1.00 42.26 29.56 68.60 2.03 44.28 16 16 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.06 3.05 4.88 -2.39 -0.01 3.04 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 2.37 8.12 -2.39 -0.02 2.35 16 27 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 Total: -1.00 -76.12 252.65 3.87 -72.25 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.10 Total: 14.74 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 3.53 Total: -4.45 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.73 Total: -86.12 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.05 Total: -40.70 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -76.12 3.87 -72.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.983 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds