Wall clock time and date at job start Mon Mar 30 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 C 1.52995 * 109.47516 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.53412 * 305.09974 * 4 3 2 6 6 C 1.53040 * 109.50464 * 65.19547 * 4 3 2 7 7 N 1.46845 * 109.52667 * 179.12345 * 6 4 3 8 8 C 1.46848 * 111.19553 * 298.25923 * 7 6 4 9 9 C 1.53045 * 109.52247 * 61.74400 * 8 7 6 10 10 C 1.53113 * 109.50753 * 185.00376 * 4 3 2 11 11 H 1.08997 * 109.57705 * 62.46548 * 10 4 3 12 12 C 1.50704 * 109.52140 * 302.30610 * 10 4 3 13 13 H 1.08003 * 119.99999 * 326.11326 * 12 10 4 14 14 C 1.37874 * 120.00122 * 146.10775 * 12 10 4 15 15 N 1.31512 * 120.00053 * 177.65641 * 14 12 10 16 16 Si 1.86798 * 119.99848 * 357.65565 * 14 12 10 17 17 H 1.48505 * 109.47177 * 274.91462 * 16 14 12 18 18 H 1.48498 * 109.47348 * 34.91931 * 16 14 12 19 19 H 1.48502 * 109.47214 * 154.91745 * 16 14 12 20 20 H 1.09005 * 109.47025 * 60.00167 * 1 2 3 21 21 H 1.09004 * 109.46666 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47378 * 299.99902 * 1 2 3 23 23 H 1.08997 * 109.47378 * 240.00097 * 2 1 3 24 24 H 1.09000 * 109.47279 * 119.99405 * 2 1 3 25 25 H 1.09005 * 109.46818 * 59.99575 * 3 2 1 26 26 H 1.09005 * 109.47098 * 300.00360 * 3 2 1 27 27 H 1.08997 * 109.45925 * 59.10665 * 6 4 3 28 28 H 1.09007 * 109.45888 * 299.14164 * 6 4 3 29 29 H 1.00903 * 110.99678 * 62.35586 * 7 6 4 30 30 H 1.08994 * 109.46138 * 301.72725 * 8 7 6 31 31 H 1.09000 * 109.45208 * 181.75141 * 8 7 6 32 32 H 1.08996 * 109.49939 * 180.87932 * 9 8 7 33 33 H 1.08991 * 109.53823 * 60.78071 * 9 8 7 34 34 H 0.97004 * 120.00075 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9341 0.8521 0.8414 6 6 4.0815 0.8373 -1.3085 7 7 5.5498 0.8564 -1.3174 8 6 6.0634 2.2303 -1.2452 9 6 5.6110 2.8771 0.0660 10 6 4.0811 2.8805 0.1265 11 1 3.7551 3.3020 1.0773 12 6 3.5341 3.7104 -1.0063 13 1 3.3788 3.2634 -1.9771 14 6 3.2318 5.0402 -0.8033 15 7 2.7981 5.7760 -1.8032 16 14 3.4383 5.7966 0.8922 17 1 2.2170 5.5448 1.6987 18 1 4.6118 5.1861 1.5670 19 1 3.6502 7.2603 0.7587 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6765 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7057 1.4202 -2.1494 28 1 3.7311 -0.1913 -1.3943 29 1 5.9232 0.2910 -0.5697 30 1 5.6782 2.8066 -2.0863 31 1 7.1525 2.2132 -1.2849 32 1 5.9793 3.9020 0.1121 33 1 6.0073 2.3098 0.9080 34 1 2.5851 6.7115 -1.6603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:32 Heat of formation + Delta-G solvation = -30.779511 kcal Electronic energy + Delta-G solvation = -13405.518121 eV Core-core repulsion = 11336.834026 eV Total energy + Delta-G solvation = -2068.684095 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.55108 -34.47057 -32.79946 -30.81237 -30.05327 -25.99538 -24.49882 -22.49378 -21.78077 -19.91329 -18.83187 -16.49162 -15.38064 -14.77777 -14.09061 -13.76189 -13.57138 -13.18140 -12.85971 -12.59069 -12.13428 -11.77245 -11.55156 -11.26397 -10.94028 -10.83114 -10.57099 -10.55003 -10.20930 -9.87475 -9.76011 -9.71886 -9.15925 -8.79594 -8.50170 -7.53052 -6.04772 -4.02141 3.28064 3.37157 3.39127 4.43628 5.06093 5.26400 5.40224 5.44868 5.62876 5.73905 5.90412 6.01873 6.10641 6.22625 6.23383 6.27748 6.36174 6.37162 6.46516 6.65058 6.72454 6.78999 6.85191 7.00238 7.09128 7.17419 7.26671 7.34857 7.80464 7.83400 8.10137 8.55693 9.00142 9.59236 11.08171 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.015727 C = 0.011648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.392552 B = 1779.913058 C = 2403.256729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.038 0.962 6 C 0.068 3.932 7 N -0.689 5.689 8 C 0.067 3.933 9 C -0.146 4.146 10 C 0.015 3.985 11 H 0.026 0.974 12 C -0.497 4.497 13 H 0.077 0.923 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.873 3.127 17 H -0.279 1.279 18 H -0.268 1.268 19 H -0.292 1.292 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.323 0.677 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.026 0.974 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -8.733 4.226 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.125 4.125 5 H 0.056 0.944 6 C -0.061 4.061 7 N -0.315 5.315 8 C -0.062 4.062 9 C -0.186 4.186 10 C -0.004 4.004 11 H 0.044 0.956 12 C -0.535 4.535 13 H 0.095 0.905 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.701 3.299 17 H -0.205 1.205 18 H -0.192 1.192 19 H -0.218 1.218 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.652 -8.572 3.452 9.264 hybrid contribution -0.135 0.909 1.997 2.198 sum 0.517 -7.663 5.449 9.417 Atomic orbital electron populations 1.21767 0.96714 1.00480 1.01798 1.21642 0.95137 0.98615 1.01007 1.21457 0.95186 0.94235 1.02856 1.21728 0.95570 0.98262 0.96928 0.94352 1.22051 0.86905 0.99024 0.98127 1.60808 1.08267 1.12203 1.50270 1.21880 0.97177 0.88464 0.98706 1.22411 0.99928 0.99870 0.96351 1.19208 0.91147 0.92623 0.97399 0.95579 1.20941 1.41508 0.93997 0.97038 0.90484 1.25030 0.94770 0.97164 0.96123 1.69898 1.45748 1.07540 1.30899 0.86936 0.79014 0.78096 0.85820 1.20471 1.19250 1.21841 0.92676 0.93676 0.93169 0.92243 0.93199 0.93237 0.90370 0.90036 0.92704 0.86129 0.89643 0.93151 0.92711 0.95524 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.13 -1.91 5.69 -26.73 -0.15 -2.06 16 3 C -0.10 -1.86 4.30 -26.73 -0.11 -1.97 16 4 C -0.10 -2.03 2.11 -90.54 -0.19 -2.22 16 5 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 6 C 0.07 1.27 5.37 -3.83 -0.02 1.25 16 7 N -0.69 -12.39 6.87 -113.81 -0.78 -13.17 16 8 C 0.07 1.30 6.35 -3.83 -0.02 1.28 16 9 C -0.15 -3.05 5.55 -26.65 -0.15 -3.20 16 10 C 0.02 0.35 1.77 -91.65 -0.16 0.18 16 11 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 12 C -0.50 -13.10 6.17 -34.44 -0.21 -13.32 16 13 H 0.08 2.21 6.42 -52.48 -0.34 1.88 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 16 Si 0.87 21.52 26.74 -169.99 -4.55 16.97 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.38 6.82 56.52 0.39 -6.00 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.87 6.59 -51.93 -0.34 0.53 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.65 7.35 -51.93 -0.38 1.27 16 27 H 0.08 1.73 6.42 -51.93 -0.33 1.40 16 28 H 0.05 0.91 6.62 -51.93 -0.34 0.56 16 29 H 0.32 5.19 8.86 -39.29 -0.35 4.84 16 30 H 0.09 1.90 7.29 -51.93 -0.38 1.52 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 1.21 7.87 -51.93 -0.41 0.80 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 257.62 15.07 3.88 3.88 Total: -1.00 -27.99 257.62 -7.12 -35.10 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.69 Total: 3.34 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.75 Total: -19.88 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.01 Total: -39.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.55 Total: 16.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.99 -7.12 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.321 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds