Wall clock time and date at job start Mon Mar 30 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 C 1.53002 * 109.46895 * 119.99516 * 2 1 3 5 5 C 1.52996 * 109.46846 * 174.99994 * 4 2 1 6 6 H 1.09011 * 110.27101 * 55.63894 * 5 4 2 7 7 C 1.53991 * 110.31182 * 293.55099 * 5 4 2 8 8 N 1.47905 * 107.22505 * 242.20979 * 7 5 4 9 9 C 1.48813 * 105.67450 * 334.90354 * 8 7 5 10 10 C 1.54594 * 110.30938 * 177.82919 * 5 4 2 11 11 H 1.08999 * 110.72080 * 22.51913 * 10 5 4 12 12 C 1.50701 * 110.72474 * 259.23518 * 10 5 4 13 13 H 1.08002 * 120.00370 * 359.97438 * 12 10 5 14 14 C 1.37878 * 119.99735 * 180.02562 * 12 10 5 15 15 N 1.31516 * 120.00240 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99780 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47478 * 89.99647 * 16 14 12 18 18 H 1.48504 * 109.47199 * 209.99700 * 16 14 12 19 19 H 1.48502 * 109.47359 * 329.99549 * 16 14 12 20 20 H 1.08996 * 109.47212 * 299.99805 * 1 2 3 21 21 H 1.08995 * 109.47195 * 60.00364 * 1 2 3 22 22 H 1.09004 * 109.46657 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47135 * 239.99768 * 2 1 3 24 24 H 1.09003 * 109.46773 * 180.02562 * 3 2 1 25 25 H 1.09008 * 109.46757 * 299.99576 * 3 2 1 26 26 H 1.08996 * 109.47177 * 60.00174 * 3 2 1 27 27 H 1.09002 * 109.47089 * 55.00520 * 4 2 1 28 28 H 1.08996 * 109.47140 * 295.00274 * 4 2 1 29 29 H 1.09002 * 109.91707 * 1.66039 * 7 5 4 30 30 H 1.09002 * 109.91668 * 122.75830 * 7 5 4 31 31 H 1.00892 * 110.99818 * 95.27851 * 8 7 5 32 32 H 1.08998 * 110.51915 * 280.54171 * 9 8 7 33 33 H 1.09009 * 110.83927 * 157.56590 * 9 8 7 34 34 H 0.97000 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 4.0099 0.1564 1.0641 7 6 3.9881 -1.7569 0.0327 8 7 4.7018 -2.9058 0.6312 9 6 5.2421 -2.4127 1.9271 10 6 4.1058 -1.5088 2.4678 11 1 3.3300 -2.1080 2.9443 12 6 4.6518 -0.4813 3.4255 13 1 4.6260 0.5667 3.1656 14 6 5.1851 -0.8792 4.6331 15 7 5.2169 -2.1553 4.9494 16 14 5.8612 0.3945 5.8205 17 1 4.7783 0.8471 6.7304 18 1 6.9595 -0.2068 6.6189 19 1 6.3832 1.5559 5.0563 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6766 1.9564 0.8900 27 1 1.6055 -1.7197 1.2953 28 1 1.7516 -0.1582 2.1370 29 1 3.1067 -2.1065 -0.5050 30 1 4.6504 -1.2222 -0.6481 31 1 4.0769 -3.6851 0.7738 32 1 6.1511 -1.8332 1.7663 33 1 5.4316 -3.2419 2.6090 34 1 5.5918 -2.4352 5.7991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:33 Heat of formation + Delta-G solvation = -30.132542 kcal Electronic energy + Delta-G solvation = -13128.005383 eV Core-core repulsion = 11059.349342 eV Total energy + Delta-G solvation = -2068.656041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.27298 -35.33172 -32.62117 -29.91140 -28.16507 -26.88826 -24.94205 -23.75236 -20.97530 -19.43805 -18.45899 -16.55501 -15.61252 -14.70979 -14.33909 -13.77959 -13.59417 -12.91880 -12.72485 -12.12434 -11.99981 -11.79106 -11.45931 -11.19789 -11.00961 -10.88313 -10.68292 -10.55548 -10.38237 -10.20498 -9.71395 -9.54837 -8.98765 -8.92449 -8.48183 -7.59354 -6.02911 -4.04137 3.29990 3.37045 3.40212 4.43254 5.16457 5.25533 5.29291 5.32242 5.39789 5.75842 5.84761 5.91940 5.97692 6.08970 6.09847 6.21144 6.30026 6.38016 6.48383 6.54903 6.63271 6.74683 6.93388 7.03153 7.08189 7.24031 7.50703 7.66544 7.84910 7.97760 8.30041 8.45035 8.97668 9.59284 11.07282 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.011097 C = 0.009251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.790047 B = 2522.489623 C = 3026.118264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.097 4.097 5 C -0.116 4.116 6 H 0.069 0.931 7 C 0.047 3.953 8 N -0.691 5.691 9 C 0.056 3.944 10 C 0.029 3.971 11 H 0.031 0.969 12 C -0.507 4.507 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.321 0.679 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 2.673 -7.604 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.135 4.135 5 C -0.136 4.136 6 H 0.087 0.913 7 C -0.083 4.083 8 N -0.316 5.316 9 C -0.073 4.073 10 C 0.009 3.991 11 H 0.049 0.951 12 C -0.545 4.545 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.269 2.592 -7.871 9.820 hybrid contribution -0.429 0.754 1.370 1.621 sum -5.698 3.345 -6.501 9.269 Atomic orbital electron populations 1.21843 0.96163 1.01179 1.01081 1.21193 0.94752 0.96541 0.99279 1.21851 1.01678 0.95993 1.00725 1.21609 0.96072 0.99193 0.96613 1.22553 0.94115 0.99756 0.97193 0.91308 1.22741 0.96021 0.92615 0.96910 1.63075 1.35477 1.07144 1.25950 1.23221 0.98674 0.98816 0.86571 1.20139 0.93775 0.94414 0.90775 0.95115 1.21074 1.39314 0.92883 1.01275 0.92692 1.24992 0.95910 0.95181 0.97933 1.69941 1.45808 1.14312 1.22973 0.86627 0.78689 0.81747 0.81148 1.20788 1.21250 1.19920 0.92908 0.93419 0.93109 0.91631 0.92131 0.93748 0.92909 0.93180 0.91962 0.93274 0.92447 0.86548 0.92112 0.91016 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.10 -1.44 2.80 -90.61 -0.25 -1.69 16 3 C -0.15 -2.05 8.96 37.16 0.33 -1.72 16 4 C -0.10 -1.72 3.88 -26.73 -0.10 -1.83 16 5 C -0.12 -2.36 2.41 -89.27 -0.22 -2.57 16 6 H 0.07 1.45 5.96 -51.92 -0.31 1.14 16 7 C 0.05 0.88 6.64 -2.75 -0.02 0.86 16 8 N -0.69 -14.08 7.54 -109.86 -0.83 -14.91 16 9 C 0.06 1.33 6.45 -1.74 -0.01 1.32 16 10 C 0.03 0.71 2.44 -89.91 -0.22 0.49 16 11 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 12 C -0.51 -13.81 8.48 -34.44 -0.29 -14.10 16 13 H 0.05 1.49 7.55 -52.49 -0.40 1.09 16 14 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16 15 N -0.89 -25.55 12.42 55.43 0.69 -24.86 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.93 6.77 -51.93 -0.35 0.58 16 24 H 0.06 0.91 6.49 -51.93 -0.34 0.58 16 25 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.82 6.75 -51.93 -0.35 0.47 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.32 6.09 8.92 -39.30 -0.35 5.74 16 32 H 0.06 1.54 8.04 -51.93 -0.42 1.12 16 33 H 0.07 1.84 7.66 -51.92 -0.40 1.44 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -27.66 266.88 -7.51 -35.17 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.84 Total: 3.37 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.53 Total: -19.12 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.14 Total: -39.77 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.66 -7.51 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.041 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds