Wall clock time and date at job start Mon Mar 30 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 C 1.53002 * 109.46895 * 119.99516 * 2 1 3 5 5 C 1.52996 * 109.46846 * 174.99994 * 4 2 1 6 6 H 1.09011 * 110.27101 * 55.63894 * 5 4 2 7 7 C 1.53991 * 110.31182 * 293.55099 * 5 4 2 8 8 N 1.47905 * 107.22505 * 242.20979 * 7 5 4 9 9 C 1.48813 * 105.67450 * 334.90354 * 8 7 5 10 10 C 1.54594 * 110.30938 * 177.82919 * 5 4 2 11 11 H 1.08999 * 110.72080 * 22.51913 * 10 5 4 12 12 C 1.50701 * 110.72474 * 259.23518 * 10 5 4 13 13 H 1.08002 * 120.00370 * 359.97438 * 12 10 5 14 14 C 1.37878 * 119.99735 * 180.02562 * 12 10 5 15 15 N 1.31516 * 120.00240 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99780 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47478 * 89.99647 * 16 14 12 18 18 H 1.48504 * 109.47199 * 209.99700 * 16 14 12 19 19 H 1.48502 * 109.47359 * 329.99549 * 16 14 12 20 20 H 1.08996 * 109.47212 * 299.99805 * 1 2 3 21 21 H 1.08995 * 109.47195 * 60.00364 * 1 2 3 22 22 H 1.09004 * 109.46657 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47135 * 239.99768 * 2 1 3 24 24 H 1.09003 * 109.46773 * 180.02562 * 3 2 1 25 25 H 1.09008 * 109.46757 * 299.99576 * 3 2 1 26 26 H 1.08996 * 109.47177 * 60.00174 * 3 2 1 27 27 H 1.09002 * 109.47089 * 55.00520 * 4 2 1 28 28 H 1.08996 * 109.47140 * 295.00274 * 4 2 1 29 29 H 1.09002 * 109.91707 * 1.66039 * 7 5 4 30 30 H 1.09002 * 109.91668 * 122.75830 * 7 5 4 31 31 H 1.00892 * 110.99818 * 95.27851 * 8 7 5 32 32 H 1.08998 * 110.51915 * 280.54171 * 9 8 7 33 33 H 1.09009 * 110.83927 * 157.56590 * 9 8 7 34 34 H 0.97000 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 4.0099 0.1564 1.0641 7 6 3.9881 -1.7569 0.0327 8 7 4.7018 -2.9058 0.6312 9 6 5.2421 -2.4127 1.9271 10 6 4.1058 -1.5088 2.4678 11 1 3.3300 -2.1080 2.9443 12 6 4.6518 -0.4813 3.4255 13 1 4.6260 0.5667 3.1656 14 6 5.1851 -0.8792 4.6331 15 7 5.2169 -2.1553 4.9494 16 14 5.8612 0.3945 5.8205 17 1 4.7783 0.8471 6.7304 18 1 6.9595 -0.2068 6.6189 19 1 6.3832 1.5559 5.0563 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6766 1.9564 0.8900 27 1 1.6055 -1.7197 1.2953 28 1 1.7516 -0.1582 2.1370 29 1 3.1067 -2.1065 -0.5050 30 1 4.6504 -1.2222 -0.6481 31 1 4.0769 -3.6851 0.7738 32 1 6.1511 -1.8332 1.7663 33 1 5.4316 -3.2419 2.6090 34 1 5.5918 -2.4352 5.7991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:33 Heat of formation + Delta-G solvation = -47.420253 kcal Electronic energy + Delta-G solvation = -13128.755034 eV Core-core repulsion = 11059.349342 eV Total energy + Delta-G solvation = -2069.405692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.92065 -36.69778 -34.68752 -31.52935 -30.00474 -27.96201 -26.66948 -25.55081 -22.60867 -21.06728 -19.97294 -18.59255 -17.26436 -16.55611 -15.93169 -15.24446 -14.89472 -14.59349 -14.22604 -13.97711 -13.40584 -13.16381 -12.97185 -12.87469 -12.76186 -12.43942 -12.39954 -12.14256 -11.95016 -11.58967 -11.27669 -11.19479 -10.92924 -10.71096 -10.55834 -9.34462 -8.15406 -6.23199 1.38708 1.39976 1.49886 2.41222 3.16215 3.63362 3.96604 3.99303 4.14123 4.38066 4.40913 4.52487 4.79636 4.82195 4.84562 4.90246 4.92170 5.06608 5.10552 5.11311 5.20567 5.28094 5.37401 5.43265 5.49254 5.59912 5.65108 5.71011 5.90121 6.01075 6.38327 6.63957 6.86200 7.43352 8.94008 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.011097 C = 0.009251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.790047 B = 2522.489623 C = 3026.118264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.108 4.108 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.685 5.685 9 C 0.069 3.931 10 C 0.023 3.977 11 H 0.001 0.999 12 C -0.523 4.523 13 H 0.050 0.950 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.952 3.048 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.047 0.953 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.332 0.668 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 3.454 -8.909 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.129 4.129 5 C -0.128 4.128 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.311 5.311 9 C -0.061 4.061 10 C 0.003 3.997 11 H 0.019 0.981 12 C -0.562 4.562 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.193 1.193 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.027 3.376 -9.191 11.498 hybrid contribution -0.209 0.493 1.767 1.847 sum -6.236 3.869 -7.424 10.439 Atomic orbital electron populations 1.21812 0.94402 1.01830 1.01922 1.21148 0.96199 0.96291 0.97552 1.21846 1.00772 0.96006 1.01594 1.21531 0.94200 0.99434 0.97721 1.22416 0.95791 0.99097 0.95487 0.92258 1.22783 0.97166 0.91597 0.96251 1.63005 1.36370 1.08067 1.23649 1.22861 0.97911 0.97538 0.87784 1.20098 0.93272 0.94083 0.92277 0.98107 1.21400 1.39369 0.93220 1.02202 0.93172 1.25753 0.96270 0.97002 0.99634 1.70059 1.46561 1.15924 1.23401 0.85650 0.78096 0.79485 0.79024 1.20217 1.20888 1.19294 0.93364 0.91319 0.92612 0.90496 0.93528 0.91290 0.93664 0.93156 0.94135 0.90294 0.91603 0.85394 0.93907 0.93457 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.19 71.98 0.66 -2.51 16 2 C -0.09 -2.48 2.80 -10.79 -0.03 -2.51 16 3 C -0.14 -3.79 8.96 71.98 0.65 -3.14 16 4 C -0.09 -3.15 3.88 30.59 0.12 -3.03 16 5 C -0.11 -4.33 2.41 -9.92 -0.02 -4.35 16 6 H 0.06 2.49 5.96 -2.38 -0.01 2.47 16 7 C 0.05 1.82 6.64 86.44 0.57 2.40 16 8 N -0.68 -27.23 7.54 -501.50 -3.78 -31.01 16 9 C 0.07 3.34 6.45 86.59 0.56 3.90 16 10 C 0.02 1.14 2.44 -10.34 -0.03 1.11 16 11 H 0.00 0.04 7.86 -2.39 -0.02 0.02 16 12 C -0.52 -29.06 8.48 25.60 0.22 -28.85 16 13 H 0.05 2.76 7.55 -2.91 -0.02 2.74 16 14 C 0.01 0.68 5.36 84.65 0.45 1.14 16 15 N -0.92 -53.82 12.42 21.45 0.27 -53.55 16 16 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.08 1.90 6.77 -2.39 -0.02 1.88 16 24 H 0.05 1.33 6.49 -2.39 -0.02 1.32 16 25 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 2.35 6.75 -2.39 -0.02 2.33 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.33 12.17 8.92 -89.70 -0.80 11.37 16 32 H 0.04 2.21 8.04 -2.39 -0.02 2.19 16 33 H 0.05 2.50 7.66 -2.38 -0.02 2.48 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -59.36 266.88 1.92 -57.45 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.25 Total: 16.79 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 3.15 Total: -35.84 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.51 Total: -84.56 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.36 1.92 -57.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -59.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds