Wall clock time and date at job start Mon Mar 30 2020 20:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.52993 * 109.47137 * 120.00354 * 2 1 3 5 5 N 1.46895 * 109.47524 * 64.99746 * 4 2 1 6 6 C 1.46908 * 111.00269 * 174.48996 * 5 4 2 7 7 C 1.50702 * 112.84832 * 294.63536 * 6 5 4 8 8 H 1.08005 * 119.99599 * 117.97163 * 7 6 5 9 9 C 1.37875 * 120.00149 * 297.97220 * 7 6 5 10 10 N 1.31516 * 119.99790 * 3.07300 * 9 7 6 11 11 Si 1.86798 * 120.00012 * 183.06932 * 9 7 6 12 12 H 1.48494 * 109.47540 * 270.00067 * 11 9 7 13 13 H 1.48506 * 109.47048 * 30.00208 * 11 9 7 14 14 H 1.48498 * 109.47077 * 150.00070 * 11 9 7 15 15 C 1.53779 * 113.61145 * 65.83241 * 6 5 4 16 16 C 1.53949 * 87.02021 * 89.22778 * 15 6 5 17 17 C 1.53781 * 87.11280 * 25.36415 * 16 15 6 18 18 H 1.09000 * 109.46853 * 300.00001 * 1 2 3 19 19 H 1.08998 * 109.47518 * 59.99727 * 1 2 3 20 20 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46853 * 239.99999 * 2 1 3 22 22 H 1.08995 * 109.46947 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.47118 * 300.00123 * 3 2 1 24 24 H 1.09000 * 109.47298 * 60.00271 * 3 2 1 25 25 H 1.09000 * 109.47023 * 304.99738 * 4 2 1 26 26 H 1.09001 * 109.46875 * 185.00042 * 4 2 1 27 27 H 1.00900 * 111.00486 * 298.44452 * 5 4 2 28 28 H 0.96993 * 120.00248 * 355.30056 * 10 9 7 29 29 H 1.09002 * 113.60924 * 203.75108 * 15 6 5 30 30 H 1.09006 * 113.61660 * 334.64786 * 15 6 5 31 31 H 1.08995 * 113.54142 * 270.80800 * 16 15 6 32 32 H 1.09000 * 113.74190 * 139.93924 * 16 15 6 33 33 H 1.09000 * 113.61707 * 220.09543 * 17 16 15 34 34 H 1.08994 * 113.69691 * 89.19636 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 -2.1367 1.1903 6 6 2.2350 -2.8898 2.3085 7 6 3.7393 -2.9571 2.2469 8 1 4.3321 -2.5213 3.0376 9 6 4.3587 -3.5748 1.1812 10 7 3.6394 -4.0519 0.1890 11 14 6.2196 -3.7339 1.1467 12 1 6.8058 -2.5447 0.4780 13 1 6.7345 -3.8242 2.5367 14 1 6.5978 -4.9594 0.3982 15 6 1.6930 -2.4684 3.6845 16 6 0.5894 -3.5227 3.4833 17 6 1.5667 -4.2540 2.5479 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6054 -0.2618 2.1369 26 1 3.1263 -0.6443 1.2950 27 1 0.6474 -2.2357 1.1727 28 1 2.6709 -4.0306 0.2380 29 1 2.3693 -2.6959 4.5085 30 1 1.3201 -1.4444 3.7121 31 1 -0.2944 -3.1364 2.9758 32 1 0.3478 -4.0830 4.3865 33 1 1.0920 -4.6695 1.6590 34 1 2.2088 -4.9711 3.0592 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260325918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:38 Heat of formation + Delta-G solvation = 0.352783 kcal Electronic energy + Delta-G solvation = -13377.518412 eV Core-core repulsion = 11310.184314 eV Total energy + Delta-G solvation = -2067.334098 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.57808 -35.68813 -32.19558 -30.83363 -26.82532 -25.62313 -24.87675 -23.85079 -21.81624 -19.33986 -18.17793 -16.59751 -15.21508 -14.65491 -14.12645 -13.64848 -13.50930 -13.00868 -12.64016 -12.36981 -11.94154 -11.89531 -11.60013 -11.13938 -10.71597 -10.54235 -10.42644 -10.25211 -10.13773 -10.05042 -9.93574 -9.59026 -9.22514 -8.30705 -8.15142 -7.08303 -6.05279 -3.85887 3.51296 3.54232 3.69474 4.66359 5.14634 5.42283 5.48108 5.53758 5.64887 5.75766 5.80165 5.85839 5.93746 6.12630 6.20467 6.20571 6.31825 6.36104 6.45203 6.51856 6.63410 6.72748 6.81315 6.93557 6.98830 7.07464 7.24582 7.40079 8.04333 8.48549 8.67428 8.85107 9.18550 9.95469 11.33453 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.014813 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.046981 B = 1889.750413 C = 2550.224045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.142 4.142 4 C 0.084 3.916 5 N -0.656 5.656 6 C 0.221 3.779 7 C -0.593 4.593 8 H 0.044 0.956 9 C 0.038 3.962 10 N -0.893 5.893 11 Si 1.060 2.940 12 H -0.291 1.291 13 H -0.292 1.292 14 H -0.287 1.287 15 C -0.167 4.167 16 C -0.152 4.152 17 C -0.125 4.125 18 H 0.044 0.956 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.006 0.994 26 H 0.079 0.921 27 H 0.304 0.696 28 H 0.289 0.711 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 5.714 1.661 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.046 4.046 5 N -0.285 5.285 6 C 0.131 3.869 7 C -0.632 4.632 8 H 0.062 0.938 9 C -0.171 4.171 10 N -0.527 5.527 11 Si 0.889 3.111 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.213 1.213 15 C -0.207 4.207 16 C -0.189 4.189 17 C -0.163 4.163 18 H 0.063 0.937 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.060 5.007 0.269 5.874 hybrid contribution -1.880 0.903 1.784 2.744 sum -4.941 5.910 2.053 7.972 Atomic orbital electron populations 1.21823 0.96419 1.01434 1.00402 1.21162 0.94837 0.95212 1.00433 1.21778 1.01141 0.96447 1.00629 1.21642 1.01419 0.88240 0.93284 1.60741 1.11665 1.09142 1.46916 1.19661 0.94639 0.89217 0.83335 1.21557 0.89202 1.42175 1.10283 0.93796 1.25487 1.05805 0.93586 0.92223 1.70504 1.10098 1.41803 1.30341 0.83709 0.75564 0.76586 0.75194 1.21789 1.21842 1.21273 1.23614 0.97944 0.96263 1.02901 1.22940 0.96909 0.99537 0.99549 1.23051 0.96905 0.98984 0.97403 0.93689 0.93535 0.92512 0.90504 0.92677 0.93363 0.93401 0.97551 0.90276 0.87960 0.89779 0.91103 0.94023 0.92027 0.93232 0.93161 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.96 37.16 0.33 -1.84 16 2 C -0.10 -1.71 3.13 -90.62 -0.28 -1.99 16 3 C -0.14 -2.12 9.19 37.16 0.34 -1.78 16 4 C 0.08 1.74 4.77 -3.83 -0.02 1.72 16 5 N -0.66 -14.89 5.20 -100.31 -0.52 -15.41 16 6 C 0.22 5.35 0.26 -131.94 -0.03 5.31 16 7 C -0.59 -16.40 7.43 -34.44 -0.26 -16.65 16 8 H 0.04 1.24 7.82 -52.48 -0.41 0.83 16 9 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 10 N -0.89 -26.61 13.50 55.43 0.75 -25.86 16 11 Si 1.06 25.39 29.90 -169.99 -5.08 20.31 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 C -0.17 -3.60 7.18 -25.83 -0.19 -3.79 16 16 C -0.15 -2.96 7.75 -25.83 -0.20 -3.16 16 17 C -0.12 -2.85 6.54 -25.92 -0.17 -3.02 16 18 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.89 6.81 -51.93 -0.35 0.54 16 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.01 0.13 6.82 -51.93 -0.35 -0.22 16 26 H 0.08 1.88 7.28 -51.93 -0.38 1.50 16 27 H 0.30 6.35 6.35 -39.29 -0.25 6.10 16 28 H 0.29 8.56 5.71 -40.82 -0.23 8.33 16 29 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 30 H 0.04 0.86 6.76 -51.93 -0.35 0.50 16 31 H 0.06 1.11 7.73 -51.93 -0.40 0.71 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 1.16 7.80 -51.93 -0.41 0.76 16 34 H 0.07 1.77 8.09 -51.93 -0.42 1.35 16 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -28.88 266.76 -7.14 -36.01 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.73 Total: 5.13 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -0.57 Total: -24.20 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.23 Total: -41.26 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.88 -7.14 -36.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds