Wall clock time and date at job start Mon Mar 30 2020 20:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.52993 * 109.47137 * 120.00354 * 2 1 3 5 5 N 1.46895 * 109.47524 * 64.99746 * 4 2 1 6 6 C 1.46908 * 111.00269 * 174.48996 * 5 4 2 7 7 C 1.50702 * 112.84832 * 294.63536 * 6 5 4 8 8 H 1.08005 * 119.99599 * 117.97163 * 7 6 5 9 9 C 1.37875 * 120.00149 * 297.97220 * 7 6 5 10 10 N 1.31516 * 119.99790 * 3.07300 * 9 7 6 11 11 Si 1.86798 * 120.00012 * 183.06932 * 9 7 6 12 12 H 1.48494 * 109.47540 * 270.00067 * 11 9 7 13 13 H 1.48506 * 109.47048 * 30.00208 * 11 9 7 14 14 H 1.48498 * 109.47077 * 150.00070 * 11 9 7 15 15 C 1.53779 * 113.61145 * 65.83241 * 6 5 4 16 16 C 1.53949 * 87.02021 * 89.22778 * 15 6 5 17 17 C 1.53781 * 87.11280 * 25.36415 * 16 15 6 18 18 H 1.09000 * 109.46853 * 300.00001 * 1 2 3 19 19 H 1.08998 * 109.47518 * 59.99727 * 1 2 3 20 20 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46853 * 239.99999 * 2 1 3 22 22 H 1.08995 * 109.46947 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.47118 * 300.00123 * 3 2 1 24 24 H 1.09000 * 109.47298 * 60.00271 * 3 2 1 25 25 H 1.09000 * 109.47023 * 304.99738 * 4 2 1 26 26 H 1.09001 * 109.46875 * 185.00042 * 4 2 1 27 27 H 1.00900 * 111.00486 * 298.44452 * 5 4 2 28 28 H 0.96993 * 120.00248 * 355.30056 * 10 9 7 29 29 H 1.09002 * 113.60924 * 203.75108 * 15 6 5 30 30 H 1.09006 * 113.61660 * 334.64786 * 15 6 5 31 31 H 1.08995 * 113.54142 * 270.80800 * 16 15 6 32 32 H 1.09000 * 113.74190 * 139.93924 * 16 15 6 33 33 H 1.09000 * 113.61707 * 220.09543 * 17 16 15 34 34 H 1.08994 * 113.69691 * 89.19636 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 -2.1367 1.1903 6 6 2.2350 -2.8898 2.3085 7 6 3.7393 -2.9571 2.2469 8 1 4.3321 -2.5213 3.0376 9 6 4.3587 -3.5748 1.1812 10 7 3.6394 -4.0519 0.1890 11 14 6.2196 -3.7339 1.1467 12 1 6.8058 -2.5447 0.4780 13 1 6.7345 -3.8242 2.5367 14 1 6.5978 -4.9594 0.3982 15 6 1.6930 -2.4684 3.6845 16 6 0.5894 -3.5227 3.4833 17 6 1.5667 -4.2540 2.5479 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6054 -0.2618 2.1369 26 1 3.1263 -0.6443 1.2950 27 1 0.6474 -2.2357 1.1727 28 1 2.6709 -4.0306 0.2380 29 1 2.3693 -2.6959 4.5085 30 1 1.3201 -1.4444 3.7121 31 1 -0.2944 -3.1364 2.9758 32 1 0.3478 -4.0830 4.3865 33 1 1.0920 -4.6695 1.6590 34 1 2.2088 -4.9711 3.0592 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:37 Heat of formation + Delta-G solvation = -16.868570 kcal Electronic energy + Delta-G solvation = -13378.265185 eV Core-core repulsion = 11310.184314 eV Total energy + Delta-G solvation = -2068.080872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36067 -37.16101 -34.27988 -32.50878 -28.07846 -27.57787 -26.62532 -25.57577 -23.64575 -20.78754 -20.06265 -18.56759 -16.88324 -16.41477 -15.65972 -15.53669 -15.09669 -14.69130 -14.33627 -14.01618 -13.52681 -13.32698 -13.04298 -12.72321 -12.63918 -12.17466 -12.15029 -11.89033 -11.84535 -11.67980 -11.51128 -11.25608 -11.01860 -10.40104 -10.17705 -8.91950 -8.22383 -6.07937 1.54829 1.62496 1.79110 2.66411 3.34717 3.61266 3.96796 4.05925 4.07067 4.16715 4.19532 4.32729 4.55698 4.64604 4.77877 4.79569 4.88391 4.97013 5.00609 5.02457 5.08119 5.14016 5.23841 5.29405 5.41473 5.49963 5.53292 5.64216 6.05000 6.39398 6.72596 6.92113 7.14334 7.79395 9.11297 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.014813 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.046981 B = 1889.750413 C = 2550.224045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.137 4.137 4 C 0.090 3.910 5 N -0.667 5.667 6 C 0.201 3.799 7 C -0.602 4.602 8 H 0.028 0.972 9 C -0.006 4.006 10 N -0.921 5.921 11 Si 1.100 2.900 12 H -0.283 1.283 13 H -0.279 1.279 14 H -0.286 1.286 15 C -0.163 4.163 16 C -0.126 4.126 17 C -0.129 4.129 18 H 0.057 0.943 19 H 0.067 0.933 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.016 0.984 26 H 0.039 0.961 27 H 0.316 0.684 28 H 0.281 0.719 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 6.742 2.084 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.195 4.195 4 C -0.039 4.039 5 N -0.297 5.297 6 C 0.111 3.889 7 C -0.641 4.641 8 H 0.046 0.954 9 C -0.210 4.210 10 N -0.556 5.556 11 Si 0.925 3.075 12 H -0.209 1.209 13 H -0.204 1.204 14 H -0.212 1.212 15 C -0.203 4.203 16 C -0.163 4.163 17 C -0.167 4.167 18 H 0.076 0.924 19 H 0.086 0.914 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.167 6.047 0.706 7.377 hybrid contribution -1.541 0.605 1.682 2.360 sum -5.707 6.652 2.388 9.084 Atomic orbital electron populations 1.21753 0.94078 1.01413 1.02121 1.21105 0.96778 0.96091 0.97343 1.21736 1.00490 0.94838 1.02405 1.21583 0.99087 0.87812 0.95466 1.60556 1.12481 1.10071 1.46546 1.19763 0.93191 0.90601 0.85338 1.21866 0.91501 1.41266 1.09496 0.95384 1.26632 1.09174 0.93191 0.92031 1.70606 1.09787 1.43871 1.31368 0.83158 0.71687 0.76717 0.75912 1.20922 1.20417 1.21206 1.23502 0.98483 0.97539 1.00774 1.22808 0.96203 0.97716 0.99563 1.22955 0.97759 0.98134 0.97894 0.92358 0.91409 0.93407 0.93166 0.93777 0.91080 0.92080 0.96629 0.94191 0.86569 0.90709 0.91981 0.93005 0.89927 0.90823 0.94122 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.96 71.98 0.64 -3.13 16 2 C -0.09 -3.19 3.13 -10.80 -0.03 -3.23 16 3 C -0.14 -3.82 9.19 71.98 0.66 -3.16 16 4 C 0.09 3.71 4.77 86.30 0.41 4.12 16 5 N -0.67 -30.15 5.20 -471.28 -2.45 -32.60 16 6 C 0.20 9.73 0.26 3.31 0.00 9.73 16 7 C -0.60 -33.86 7.43 25.60 0.19 -33.67 16 8 H 0.03 1.61 7.82 -2.91 -0.02 1.59 16 9 C -0.01 -0.36 5.39 84.65 0.46 0.09 16 10 N -0.92 -55.84 13.50 21.45 0.29 -55.55 16 11 Si 1.10 51.78 29.90 68.60 2.05 53.84 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 C -0.16 -6.79 7.18 31.18 0.22 -6.56 16 16 C -0.13 -4.57 7.75 31.18 0.24 -4.33 16 17 C -0.13 -5.85 6.54 31.12 0.20 -5.64 16 18 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 19 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.05 1.40 6.81 -2.39 -0.02 1.38 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.02 0.61 6.82 -2.39 -0.02 0.60 16 26 H 0.04 1.94 7.28 -2.39 -0.02 1.92 16 27 H 0.32 12.86 6.35 -89.69 -0.57 12.29 16 28 H 0.28 17.00 5.71 -92.71 -0.53 16.47 16 29 H 0.06 2.66 8.09 -2.39 -0.02 2.64 16 30 H 0.05 2.02 6.76 -2.38 -0.02 2.01 16 31 H 0.08 2.69 7.73 -2.39 -0.02 2.67 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.88 7.80 -2.39 -0.02 1.87 16 34 H 0.06 2.69 8.09 -2.39 -0.02 2.67 16 Total: -1.00 -62.31 266.76 3.61 -58.70 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.72 Total: 21.40 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.00 Total: -45.78 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -2.16 Total: -88.15 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.84 kcal Total: -62.31 3.61 -58.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.833 kcal (2) G-P(sol) polarization free energy of solvation -62.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds