Wall clock time and date at job start Mon Mar 30 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 C 1.52998 * 109.47135 * 120.00393 * 2 1 3 5 5 H 1.09002 * 110.27159 * 318.28969 * 4 2 1 6 6 C 1.54595 * 110.30802 * 196.19974 * 4 2 1 7 7 C 1.54936 * 102.92039 * 219.12351 * 6 4 2 8 8 N 1.48533 * 103.37863 * 37.33130 * 7 6 4 9 9 C 1.48070 * 105.73337 * 321.02148 * 8 7 6 10 10 H 1.09001 * 109.75901 * 265.75982 * 9 8 7 11 11 C 1.53007 * 109.99246 * 144.52576 * 9 8 7 12 12 C 1.50699 * 109.47321 * 64.61927 * 11 9 8 13 13 H 1.08002 * 119.99620 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00044 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00099 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00046 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47109 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47387 * 119.99761 * 16 14 12 19 19 H 1.48498 * 109.46825 * 239.99611 * 16 14 12 20 20 H 1.08997 * 109.47293 * 316.33865 * 1 2 3 21 21 H 1.09008 * 109.46822 * 76.33430 * 1 2 3 22 22 H 1.08994 * 109.47192 * 196.33347 * 1 2 3 23 23 H 1.09001 * 109.46883 * 240.00256 * 2 1 3 24 24 H 1.08999 * 109.46579 * 60.00454 * 3 2 1 25 25 H 1.08998 * 109.46921 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47427 * 299.99753 * 3 2 1 27 27 H 1.08999 * 110.72125 * 100.76939 * 6 4 2 28 28 H 1.08999 * 110.87706 * 337.55434 * 6 4 2 29 29 H 1.08999 * 110.66859 * 155.84829 * 7 6 4 30 30 H 1.08998 * 110.67185 * 278.81501 * 7 6 4 31 31 H 1.00900 * 110.99962 * 81.38551 * 8 7 6 32 32 H 1.08994 * 109.46889 * 184.62037 * 11 9 8 33 33 H 1.09002 * 109.47056 * 304.62040 * 11 9 8 34 34 H 0.96999 * 120.00100 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.4463 -0.4374 2.1181 6 6 3.5316 -0.3919 1.4876 7 6 4.1145 -1.7475 1.9598 8 7 3.3854 -2.7422 1.1320 9 6 1.9930 -2.2465 1.0423 10 1 1.3865 -2.7084 1.8214 11 6 1.4110 -2.5679 -0.3357 12 6 1.3158 -4.0624 -0.5047 13 1 1.6385 -4.7174 0.2910 14 6 0.8177 -4.5934 -1.6755 15 7 0.4252 -3.7958 -2.6447 16 14 0.6990 -6.4459 -1.8847 17 1 1.2008 -7.1157 -0.6580 18 1 -0.7175 -6.8285 -2.1139 19 1 1.5197 -6.8661 -3.0487 20 1 -0.3634 0.7434 0.7095 21 1 -0.3633 0.2428 -0.9987 22 1 -0.3633 -0.9861 0.2890 23 1 1.8933 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9564 -0.8900 27 1 3.6399 0.3658 2.2637 28 1 4.0101 -0.0670 0.5637 29 1 5.1857 -1.7950 1.7635 30 1 3.9115 -1.9058 3.0189 31 1 3.7990 -2.8224 0.2152 32 1 0.4174 -2.1285 -0.4219 33 1 2.0591 -2.1554 -1.1091 34 1 0.0744 -4.1694 -3.4682 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:45 Heat of formation + Delta-G solvation = -31.953694 kcal Electronic energy + Delta-G solvation = -13317.626296 eV Core-core repulsion = 11248.891284 eV Total energy + Delta-G solvation = -2068.735012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.52125 -35.62617 -35.09924 -32.12929 -29.53633 -28.08957 -27.59097 -24.47885 -22.54340 -22.17629 -19.43735 -18.48371 -16.87596 -16.44486 -16.06376 -15.48665 -15.08275 -14.69334 -14.37468 -13.87015 -13.44362 -13.02756 -13.00112 -12.81174 -12.78071 -12.47565 -12.30155 -12.07304 -11.88718 -11.43599 -11.32087 -11.29375 -10.85635 -10.68518 -10.41687 -9.22733 -8.12365 -6.18043 1.38968 1.40686 1.53630 2.45383 3.19958 3.56312 3.83620 3.88550 4.16078 4.34667 4.43544 4.51689 4.61397 4.73890 4.83485 4.85846 4.91149 5.02749 5.04489 5.06986 5.14414 5.20468 5.32083 5.45545 5.50309 5.61391 5.70161 5.78276 5.92946 6.22505 6.44590 6.64524 6.97906 7.48682 8.98501 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.011295 C = 0.009356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.396197 B = 2478.296621 C = 2992.109567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.104 4.104 5 H 0.074 0.926 6 C -0.141 4.141 7 C 0.037 3.963 8 N -0.678 5.678 9 C 0.085 3.915 10 H 0.049 0.951 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.051 0.949 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.281 1.281 20 H 0.066 0.934 21 H 0.041 0.959 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.331 0.669 32 H 0.027 0.973 33 H -0.004 1.004 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 8.754 6.975 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.124 4.124 5 H 0.093 0.907 6 C -0.179 4.179 7 C -0.093 4.093 8 N -0.306 5.306 9 C -0.025 4.025 10 H 0.067 0.933 11 C -0.015 4.015 12 C -0.559 4.559 13 H 0.069 0.931 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.207 1.207 20 H 0.085 0.915 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.147 0.853 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.385 8.213 7.344 11.859 hybrid contribution -0.309 -0.418 -1.176 1.286 sum 4.077 7.795 6.168 10.744 Atomic orbital electron populations 1.21954 0.95777 1.01225 1.01003 1.21217 0.95679 0.96566 0.97725 1.21879 1.01241 0.94628 1.01780 1.22462 0.97089 0.95075 0.97775 0.90743 1.23161 0.94335 0.98762 1.01678 1.23215 0.98217 0.89293 0.98532 1.62830 1.02582 1.46370 1.18800 1.22302 0.90155 0.92236 0.97774 0.93283 1.19580 0.96189 0.94697 0.91082 1.21689 1.39920 0.93919 1.00342 0.93056 1.25790 0.95650 1.02099 0.95978 1.70081 1.44736 1.36128 1.06379 0.85572 0.77545 0.80975 0.77968 1.19330 1.20728 1.20689 0.91501 0.94004 0.93648 0.92952 0.91733 0.91919 0.93052 0.89260 0.91489 0.89913 0.90495 0.85271 0.95485 0.98620 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.42 71.98 0.61 -4.31 16 2 C -0.09 -3.14 2.07 -10.79 -0.02 -3.17 16 3 C -0.14 -3.57 8.61 71.98 0.62 -2.95 16 4 C -0.10 -3.42 2.65 -9.92 -0.03 -3.45 16 5 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 6 C -0.14 -3.78 5.47 31.80 0.17 -3.61 16 7 C 0.04 1.07 7.54 86.65 0.65 1.72 16 8 N -0.68 -26.52 7.15 -479.83 -3.43 -29.95 16 9 C 0.09 3.57 3.23 45.03 0.15 3.71 16 10 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 11 C 0.02 1.09 2.99 29.85 0.09 1.18 16 12 C -0.52 -29.81 8.85 25.60 0.23 -29.58 16 13 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.10 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.51 13.29 21.44 0.28 -56.23 16 16 Si 0.95 45.70 29.54 68.60 2.03 47.72 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 21 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 22 H 0.04 1.81 5.74 -2.39 -0.01 1.79 16 23 H 0.05 2.16 5.55 -2.39 -0.01 2.15 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.49 6.16 -2.39 -0.01 1.48 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 1.81 6.55 -2.39 -0.02 1.79 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.33 13.72 8.35 -89.69 -0.75 12.97 16 32 H 0.03 1.46 4.58 -2.39 -0.01 1.45 16 33 H 0.00 -0.24 6.45 -2.39 -0.02 -0.25 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -62.31 259.08 2.13 -60.18 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.32 Total: 18.15 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.93 Total: -39.88 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.14 Total: -86.18 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -62.31 2.13 -60.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.222 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds