Wall clock time and date at job start Mon Mar 30 2020 20:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47323 * 269.99853 * 3 2 1 5 5 H 1.48501 * 109.47199 * 30.00100 * 3 2 1 6 6 H 1.48501 * 109.46854 * 149.99570 * 3 2 1 7 7 C 1.37875 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99326 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00184 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47158 * 299.99423 * 9 7 2 11 11 C 1.53003 * 109.47397 * 59.99788 * 9 7 2 12 12 N 1.46901 * 109.46895 * 65.49282 * 11 9 7 13 13 C 1.53005 * 109.47154 * 179.97438 * 9 7 2 14 14 C 1.53000 * 109.47037 * 182.28915 * 13 9 7 15 15 C 1.52998 * 109.46687 * 180.02562 * 14 13 9 16 16 C 1.52997 * 109.47470 * 60.00113 * 15 14 13 17 17 C 1.53000 * 109.47073 * 299.99650 * 16 15 14 18 18 C 1.53005 * 109.47037 * 60.00197 * 17 16 15 19 19 H 0.97001 * 120.00046 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46720 * 305.49376 * 11 9 7 21 21 H 1.08994 * 109.47074 * 185.49377 * 11 9 7 22 22 H 1.00896 * 110.99661 * 174.07207 * 12 11 9 23 23 H 1.00901 * 111.00074 * 298.02734 * 12 11 9 24 24 H 1.08997 * 109.47216 * 302.29289 * 13 9 7 25 25 H 1.09000 * 109.47110 * 299.99818 * 14 13 9 26 26 H 1.08994 * 109.47052 * 59.99917 * 14 13 9 27 27 H 1.09000 * 109.46930 * 299.99602 * 15 14 13 28 28 H 1.09003 * 109.46850 * 179.97438 * 15 14 13 29 29 H 1.09004 * 109.46998 * 179.97438 * 16 15 14 30 30 H 1.08997 * 109.46954 * 59.99887 * 16 15 14 31 31 H 1.09000 * 109.47110 * 300.00378 * 17 16 15 32 32 H 1.08994 * 109.47046 * 179.97438 * 17 16 15 33 33 H 1.08992 * 109.47031 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47216 * 59.99625 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2490 12 7 1.2238 -2.6354 -2.4444 13 6 2.2453 -3.6621 0.0005 14 6 1.4811 -4.9863 -0.0571 15 6 2.4754 -6.1492 -0.0564 16 6 3.3161 -6.1008 1.2209 17 6 4.0803 -4.7765 1.2785 18 6 3.0861 -3.6135 1.2779 19 1 -0.4850 0.8401 0.0004 20 1 -0.2694 -1.7005 -1.2999 21 1 -0.2454 -3.4775 -1.2012 22 1 0.6716 -2.7865 -3.2753 23 1 1.7828 -1.7997 -2.5288 24 1 2.8987 -3.5815 -0.8682 25 1 0.8278 -5.0669 0.8117 26 1 0.8818 -5.0207 -0.9668 27 1 3.1290 -6.0688 -0.9250 28 1 1.9310 -7.0927 -0.0970 29 1 4.0242 -6.9295 1.2215 30 1 2.6624 -6.1812 2.0894 31 1 4.7339 -4.6961 0.4100 32 1 4.6789 -4.7418 2.1887 33 1 3.6304 -2.6702 1.3185 34 1 2.4324 -3.6939 2.1464 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:48 Heat of formation + Delta-G solvation = -54.544445 kcal Electronic energy + Delta-G solvation = -13366.580463 eV Core-core repulsion = 11296.865843 eV Total energy + Delta-G solvation = -2069.714620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70164 -36.54426 -33.84127 -32.16194 -31.39169 -28.50527 -26.13995 -23.65151 -22.91557 -20.93923 -20.13973 -18.11074 -16.86014 -16.46204 -16.02672 -15.00868 -14.90273 -14.69273 -14.45807 -14.19295 -13.34770 -13.07127 -13.00376 -12.88397 -12.59316 -12.29464 -12.17552 -11.81711 -11.71933 -11.53843 -11.20216 -10.96947 -10.51505 -10.40679 -10.26002 -9.14157 -8.00897 -6.13470 1.39480 1.42296 1.50988 2.45030 3.23046 4.02607 4.11995 4.14418 4.24153 4.56910 4.60591 4.78803 4.84397 4.85047 4.92441 4.97383 5.00542 5.28218 5.31082 5.35386 5.43051 5.43598 5.52358 5.60072 5.66949 5.73018 5.78929 6.09286 6.13121 6.48426 6.67387 6.88830 7.08738 7.52183 8.99766 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.011584 C = 0.009997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.485890 B = 2416.477909 C = 2800.118076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.016 1.016 11 C 0.073 3.927 12 N -0.833 5.833 13 C -0.054 4.054 14 C -0.107 4.107 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.107 4.107 19 H 0.256 0.744 20 H 0.027 0.973 21 H 0.033 0.967 22 H 0.326 0.674 23 H 0.335 0.665 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -8.668 -0.601 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.002 0.998 11 C -0.058 4.058 12 N -0.361 5.361 13 C -0.072 4.072 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.145 4.145 19 H 0.065 0.935 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.137 0.863 23 H 0.147 0.853 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.063 -9.188 -0.229 10.493 hybrid contribution -0.595 2.212 -0.186 2.299 sum 4.468 -6.976 -0.415 8.294 Atomic orbital electron populations 1.70036 1.07050 1.26553 1.52581 1.25670 0.95463 1.01906 0.95723 0.85757 0.78735 0.80263 0.78081 1.20191 1.21742 1.19614 1.21447 0.92756 0.91499 1.48224 0.93095 1.18691 0.93062 0.93032 0.91855 0.99783 1.21626 0.94848 0.97197 0.92085 1.58782 1.27902 1.45048 1.04359 1.20824 0.96406 0.93568 0.96412 1.21533 0.97791 0.95048 1.00097 1.21491 0.97712 0.97593 0.98089 1.21509 0.98736 0.97079 0.97722 1.21530 0.97480 0.94667 1.01446 1.21497 0.97588 0.97745 0.97623 0.93514 0.95513 0.94870 0.86314 0.85294 0.92413 0.94345 0.92812 0.92291 0.91362 0.90543 0.92575 0.92358 0.91700 0.93826 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 11.29 21.45 0.24 -52.73 16 2 C 0.01 0.53 5.29 84.65 0.45 0.98 16 3 Si 0.94 43.56 29.54 68.60 2.03 45.59 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.50 -26.80 7.00 25.60 0.18 -26.62 16 8 H 0.05 2.73 6.87 -2.91 -0.02 2.71 16 9 C 0.05 2.61 1.72 -11.54 -0.02 2.59 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C 0.07 3.47 5.71 86.30 0.49 3.96 16 12 N -0.83 -34.11 8.62 -186.72 -1.61 -35.72 16 13 C -0.05 -2.22 1.47 -10.79 -0.02 -2.24 16 14 C -0.11 -3.85 4.79 30.59 0.15 -3.71 16 15 C -0.11 -3.18 5.92 30.59 0.18 -3.00 16 16 C -0.11 -2.99 5.92 30.59 0.18 -2.81 16 17 C -0.11 -3.42 5.92 30.60 0.18 -3.24 16 18 C -0.11 -4.14 4.98 30.60 0.15 -3.99 16 19 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 20 H 0.03 1.44 5.94 -2.39 -0.01 1.43 16 21 H 0.03 1.49 6.70 -2.39 -0.02 1.47 16 22 H 0.33 11.55 9.08 -89.70 -0.81 10.73 16 23 H 0.34 14.59 8.25 -89.69 -0.74 13.85 16 24 H 0.06 2.52 7.54 -2.39 -0.02 2.50 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.99 6.51 -2.39 -0.02 1.98 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.85 6.76 -2.39 -0.02 1.83 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -57.33 258.75 2.11 -55.22 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.48 Total: 25.72 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 1.93 Total: -38.08 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -1.37 Total: -88.45 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -57.33 2.11 -55.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.675 kcal (2) G-P(sol) polarization free energy of solvation -57.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds