Wall clock time and date at job start Mon Mar 30 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47194 * 300.00305 * 3 2 1 6 6 H 1.48494 * 109.47112 * 60.00558 * 3 2 1 7 7 C 1.37870 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00090 * 177.48540 * 7 2 1 9 9 C 1.50704 * 120.00103 * 357.48487 * 7 2 1 10 10 H 1.08993 * 109.46998 * 24.75403 * 9 7 2 11 11 C 1.53001 * 109.46878 * 264.74704 * 9 7 2 12 12 N 1.46904 * 109.46923 * 63.60811 * 11 9 7 13 13 C 1.53004 * 109.46760 * 144.75068 * 9 7 2 14 14 C 1.52994 * 109.47267 * 299.99699 * 13 9 7 15 15 C 1.53007 * 109.47083 * 180.02562 * 14 13 9 16 16 C 1.52995 * 109.46962 * 60.00033 * 15 14 13 17 17 C 1.52997 * 109.47544 * 299.99899 * 16 15 14 18 18 C 1.53005 * 109.46603 * 179.97438 * 13 9 7 19 19 H 0.96997 * 120.00143 * 185.32819 * 1 2 3 20 20 H 1.08997 * 109.46663 * 183.60174 * 11 9 7 21 21 H 1.08995 * 109.47258 * 303.60110 * 11 9 7 22 22 H 1.00893 * 111.00169 * 65.31535 * 12 11 9 23 23 H 1.00897 * 110.99851 * 189.27527 * 12 11 9 24 24 H 1.09005 * 109.47442 * 60.00458 * 13 9 7 25 25 H 1.09000 * 109.46994 * 300.00239 * 14 13 9 26 26 H 1.09002 * 109.46867 * 60.00660 * 14 13 9 27 27 H 1.08996 * 109.46682 * 300.00013 * 15 14 13 28 28 H 1.09001 * 109.46995 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47132 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47361 * 59.99931 * 16 15 14 31 31 H 1.08996 * 109.47197 * 300.00691 * 17 16 15 32 32 H 1.08992 * 109.47626 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47017 * 299.99988 * 18 13 9 34 34 H 1.08997 * 109.46859 * 59.99957 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1945 -0.0416 9 6 1.2520 -2.4985 0.0562 10 1 0.2465 -2.3554 -0.3394 11 6 1.1663 -2.9751 1.5075 12 7 0.3877 -2.0097 2.2947 13 6 1.9855 -3.5472 -0.7825 14 6 2.0713 -3.0706 -2.2338 15 6 2.8043 -4.1195 -3.0726 16 6 2.0399 -5.4436 -3.0150 17 6 1.9541 -5.9203 -1.5637 18 6 1.2219 -4.8718 -0.7244 19 1 -0.4850 -0.8364 0.0780 20 1 0.6786 -3.9493 1.5417 21 1 2.1707 -3.0569 1.9230 22 1 -0.5718 -1.9799 1.9839 23 1 0.4422 -2.2191 3.2802 24 1 2.9912 -3.6903 -0.3870 25 1 1.0657 -2.9275 -2.6293 26 1 2.6156 -2.1271 -2.2748 27 1 3.8098 -4.2629 -2.6772 28 1 2.8658 -3.7798 -4.1065 29 1 2.5623 -6.1910 -3.6121 30 1 1.0343 -5.3002 -3.4103 31 1 2.9596 -6.0637 -1.1683 32 1 1.4099 -6.8637 -1.5226 33 1 1.1612 -5.2111 0.3096 34 1 0.2162 -4.7289 -1.1196 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:49 Heat of formation + Delta-G solvation = -36.956278 kcal Electronic energy + Delta-G solvation = -13336.902025 eV Core-core repulsion = 11267.950084 eV Total energy + Delta-G solvation = -2068.951940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.29323 -34.96030 -31.83676 -30.81711 -30.14037 -26.47744 -23.77891 -22.11737 -21.46057 -19.71521 -19.02055 -16.37991 -15.18378 -14.59005 -13.98376 -13.62030 -13.58945 -13.32512 -13.05605 -12.49031 -12.11777 -11.57256 -11.43527 -10.94618 -10.71126 -10.61730 -10.54692 -10.49904 -9.99759 -9.91232 -9.51281 -9.29761 -8.98669 -8.26350 -8.02291 -7.36007 -6.03764 -3.69743 3.57150 3.62589 3.73858 4.74295 5.18487 5.29711 5.30291 5.63339 5.68524 5.81601 5.92612 6.02805 6.05937 6.09804 6.18891 6.24942 6.34706 6.47065 6.53350 6.61893 6.64800 6.75494 6.85661 7.08049 7.21356 7.25081 7.40932 7.71494 8.25508 8.47865 8.55522 8.75963 9.20282 10.02324 11.36494 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.012190 C = 0.009982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.088702 B = 2296.408792 C = 2804.426101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.037 3.963 3 Si 1.065 2.935 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.572 4.572 8 H 0.039 0.961 9 C 0.034 3.966 10 H 0.033 0.967 11 C 0.074 3.926 12 N -0.822 5.822 13 C -0.068 4.068 14 C -0.097 4.097 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.119 4.119 19 H 0.268 0.732 20 H -0.013 1.013 21 H 0.047 0.953 22 H 0.330 0.670 23 H 0.313 0.687 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -8.978 -2.260 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.896 3.104 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.610 4.610 8 H 0.057 0.943 9 C 0.015 3.985 10 H 0.051 0.949 11 C -0.057 4.057 12 N -0.349 5.349 13 C -0.088 4.088 14 C -0.135 4.135 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 H 0.080 0.920 20 H 0.005 0.995 21 H 0.066 0.934 22 H 0.143 0.857 23 H 0.124 0.876 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.807 -6.784 -2.633 7.800 hybrid contribution -0.315 -2.524 0.524 2.597 sum 2.492 -9.308 -2.109 9.864 Atomic orbital electron populations 1.70683 1.06862 1.30615 1.46651 1.25392 0.96511 1.01607 0.93279 0.83617 0.74474 0.75864 0.76398 1.22061 1.22027 1.21776 1.21603 0.93280 0.91223 1.54854 0.94250 1.18970 0.96774 0.93834 0.88940 0.94857 1.22140 0.95666 0.89494 0.98374 1.58399 1.16226 1.55445 1.04822 1.21089 0.98466 0.93358 0.95837 1.21393 0.99777 0.97912 0.94416 1.21612 0.99127 0.95576 0.99532 1.21511 1.00263 0.97152 0.96441 1.21523 1.00313 0.97896 0.95711 1.21736 0.99111 0.96139 0.98633 0.92015 0.99495 0.93428 0.85742 0.87646 0.93171 0.93273 0.90742 0.92736 0.93042 0.93197 0.92486 0.92614 0.93243 0.92752 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.12 13.51 55.43 0.75 -26.37 16 2 C 0.04 1.05 5.29 -17.82 -0.09 0.96 16 3 Si 1.07 26.23 29.90 -169.99 -5.08 21.15 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.57 -15.75 6.77 -34.44 -0.23 -15.98 16 8 H 0.04 1.12 7.82 -52.48 -0.41 0.71 16 9 C 0.03 0.82 1.56 -91.77 -0.14 0.68 16 10 H 0.03 0.89 6.24 -51.93 -0.32 0.56 16 11 C 0.07 1.64 5.91 -3.82 -0.02 1.62 16 12 N -0.82 -18.15 8.74 -10.37 -0.09 -18.24 16 13 C -0.07 -1.41 1.77 -90.62 -0.16 -1.57 16 14 C -0.10 -1.95 4.96 -26.73 -0.13 -2.08 16 15 C -0.12 -1.95 5.92 -26.73 -0.16 -2.11 16 16 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C -0.12 -1.74 5.92 -26.75 -0.16 -1.90 16 18 C -0.12 -2.09 4.85 -26.75 -0.13 -2.22 16 19 H 0.27 7.86 5.61 -40.82 -0.23 7.63 16 20 H -0.01 -0.26 6.24 -51.93 -0.32 -0.58 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.33 7.24 8.48 -39.30 -0.33 6.90 16 23 H 0.31 5.92 9.08 -39.29 -0.36 5.56 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.65 7.22 -51.93 -0.37 1.28 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -29.31 260.79 -7.59 -36.90 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.70 Total: 7.08 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.39 Total: -24.45 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.66 Total: -44.61 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.31 -7.59 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.053 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds