Wall clock time and date at job start Mon Mar 30 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47194 * 300.00305 * 3 2 1 6 6 H 1.48494 * 109.47112 * 60.00558 * 3 2 1 7 7 C 1.37870 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00090 * 177.48540 * 7 2 1 9 9 C 1.50704 * 120.00103 * 357.48487 * 7 2 1 10 10 H 1.08993 * 109.46998 * 24.75403 * 9 7 2 11 11 C 1.53001 * 109.46878 * 264.74704 * 9 7 2 12 12 N 1.46904 * 109.46923 * 63.60811 * 11 9 7 13 13 C 1.53004 * 109.46760 * 144.75068 * 9 7 2 14 14 C 1.52994 * 109.47267 * 299.99699 * 13 9 7 15 15 C 1.53007 * 109.47083 * 180.02562 * 14 13 9 16 16 C 1.52995 * 109.46962 * 60.00033 * 15 14 13 17 17 C 1.52997 * 109.47544 * 299.99899 * 16 15 14 18 18 C 1.53005 * 109.46603 * 179.97438 * 13 9 7 19 19 H 0.96997 * 120.00143 * 185.32819 * 1 2 3 20 20 H 1.08997 * 109.46663 * 183.60174 * 11 9 7 21 21 H 1.08995 * 109.47258 * 303.60110 * 11 9 7 22 22 H 1.00893 * 111.00169 * 65.31535 * 12 11 9 23 23 H 1.00897 * 110.99851 * 189.27527 * 12 11 9 24 24 H 1.09005 * 109.47442 * 60.00458 * 13 9 7 25 25 H 1.09000 * 109.46994 * 300.00239 * 14 13 9 26 26 H 1.09002 * 109.46867 * 60.00660 * 14 13 9 27 27 H 1.08996 * 109.46682 * 300.00013 * 15 14 13 28 28 H 1.09001 * 109.46995 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47132 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47361 * 59.99931 * 16 15 14 31 31 H 1.08996 * 109.47197 * 300.00691 * 17 16 15 32 32 H 1.08992 * 109.47626 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47017 * 299.99988 * 18 13 9 34 34 H 1.08997 * 109.46859 * 59.99957 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1945 -0.0416 9 6 1.2520 -2.4985 0.0562 10 1 0.2465 -2.3554 -0.3394 11 6 1.1663 -2.9751 1.5075 12 7 0.3877 -2.0097 2.2947 13 6 1.9855 -3.5472 -0.7825 14 6 2.0713 -3.0706 -2.2338 15 6 2.8043 -4.1195 -3.0726 16 6 2.0399 -5.4436 -3.0150 17 6 1.9541 -5.9203 -1.5637 18 6 1.2219 -4.8718 -0.7244 19 1 -0.4850 -0.8364 0.0780 20 1 0.6786 -3.9493 1.5417 21 1 2.1707 -3.0569 1.9230 22 1 -0.5718 -1.9799 1.9839 23 1 0.4422 -2.2191 3.2802 24 1 2.9912 -3.6903 -0.3870 25 1 1.0657 -2.9275 -2.6293 26 1 2.6156 -2.1271 -2.2748 27 1 3.8098 -4.2629 -2.6772 28 1 2.8658 -3.7798 -4.1065 29 1 2.5623 -6.1910 -3.6121 30 1 1.0343 -5.3002 -3.4103 31 1 2.9596 -6.0637 -1.1683 32 1 1.4099 -6.8637 -1.5226 33 1 1.1612 -5.2111 0.3096 34 1 0.2162 -4.7289 -1.1196 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:49 Heat of formation + Delta-G solvation = -55.281994 kcal Electronic energy + Delta-G solvation = -13337.696687 eV Core-core repulsion = 11267.950084 eV Total energy + Delta-G solvation = -2069.746603 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.83271 -36.69732 -33.85335 -32.45694 -31.54379 -28.24255 -25.77964 -23.70567 -22.92595 -21.42475 -20.53568 -18.45306 -16.79496 -16.25916 -15.59881 -15.56491 -15.09119 -14.81722 -14.57898 -14.24029 -13.77311 -13.26287 -12.93215 -12.73364 -12.57572 -12.23839 -11.98922 -11.94196 -11.91943 -11.45216 -11.16170 -10.90452 -10.70090 -10.29795 -10.13308 -9.11716 -8.28405 -5.93259 1.56049 1.65525 1.78859 2.70297 3.51669 3.81960 3.95845 3.99410 4.12190 4.37495 4.44787 4.57934 4.66359 4.71026 4.72278 4.80239 4.87118 4.90257 5.14351 5.18838 5.27028 5.28846 5.33150 5.43879 5.56031 5.58781 5.71986 5.84259 6.33329 6.41647 6.68948 6.87148 7.00097 7.83574 9.12940 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.012190 C = 0.009982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.088702 B = 2296.408792 C = 2804.426101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.010 4.010 3 Si 1.103 2.897 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.573 4.573 8 H 0.024 0.976 9 C 0.031 3.969 10 H 0.004 0.996 11 C 0.081 3.919 12 N -0.838 5.838 13 C -0.065 4.065 14 C -0.095 4.095 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.113 4.113 19 H 0.260 0.740 20 H 0.012 0.988 21 H 0.042 0.958 22 H 0.330 0.670 23 H 0.332 0.668 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -10.506 -2.564 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.929 3.071 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.611 4.611 8 H 0.042 0.958 9 C 0.012 3.988 10 H 0.022 0.978 11 C -0.049 4.049 12 N -0.367 5.367 13 C -0.084 4.084 14 C -0.133 4.133 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.150 4.150 19 H 0.072 0.928 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.557 -8.331 -2.930 9.520 hybrid contribution -0.539 -2.060 0.630 2.220 sum 3.018 -10.390 -2.300 11.061 Atomic orbital electron populations 1.70772 1.07501 1.30272 1.48786 1.26465 0.96708 1.04615 0.93142 0.83109 0.74207 0.73184 0.76574 1.20798 1.21338 1.21569 1.21840 0.92627 0.92956 1.53718 0.95795 1.18982 0.95067 0.93879 0.90920 0.97752 1.21950 0.95693 0.90574 0.96727 1.58341 1.16242 1.55936 1.06225 1.20992 0.97945 0.94177 0.95335 1.21313 0.98880 0.98020 0.95077 1.21557 0.98999 0.95351 0.99354 1.21514 1.00267 0.96601 0.96735 1.21510 1.00550 0.97767 0.95204 1.21645 0.98538 0.95178 0.99670 0.92847 0.97029 0.93945 0.85785 0.85618 0.93818 0.94955 0.93969 0.92175 0.91736 0.90243 0.92653 0.91964 0.90759 0.92334 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.51 21.45 0.29 -56.32 16 2 C -0.01 -0.56 5.29 84.65 0.45 -0.11 16 3 Si 1.10 53.20 29.90 68.60 2.05 55.25 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.57 -32.12 6.77 25.60 0.17 -31.94 16 8 H 0.02 1.38 7.82 -2.91 -0.02 1.36 16 9 C 0.03 1.50 1.56 -11.54 -0.02 1.49 16 10 H 0.00 0.24 6.24 -2.39 -0.01 0.22 16 11 C 0.08 3.56 5.91 86.30 0.51 4.07 16 12 N -0.84 -36.81 8.74 -186.72 -1.63 -38.44 16 13 C -0.07 -2.67 1.77 -10.79 -0.02 -2.69 16 14 C -0.10 -3.82 4.96 30.59 0.15 -3.67 16 15 C -0.12 -3.50 5.92 30.60 0.18 -3.32 16 16 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16 17 C -0.11 -2.98 5.92 30.58 0.18 -2.80 16 18 C -0.11 -3.77 4.85 30.58 0.15 -3.62 16 19 H 0.26 15.69 5.61 -92.71 -0.52 15.17 16 20 H 0.01 0.46 6.24 -2.39 -0.01 0.45 16 21 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.33 14.53 8.48 -89.70 -0.76 13.77 16 23 H 0.33 12.23 9.08 -89.70 -0.81 11.41 16 24 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.92 7.22 -2.39 -0.02 1.90 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.89 6.35 -2.39 -0.02 1.88 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -62.82 260.79 2.39 -60.43 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.25 Total: 24.41 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 1.94 Total: -45.33 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -1.34 Total: -94.76 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 2.05 Total: 55.25 kcal Total: -62.82 2.39 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.143 kcal (2) G-P(sol) polarization free energy of solvation -62.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds