Wall clock time and date at job start Mon Mar 30 2020 20:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46967 * 2 1 4 4 C 1.52996 * 109.47446 * 120.00187 * 2 1 3 5 5 H 1.08993 * 109.47345 * 185.14752 * 4 2 1 6 6 C 1.50700 * 109.47108 * 65.14167 * 4 2 1 7 7 H 1.07996 * 120.00359 * 245.13218 * 6 4 2 8 8 C 1.37884 * 119.99823 * 65.13464 * 6 4 2 9 9 N 1.31509 * 119.99890 * 355.58448 * 8 6 4 10 10 Si 1.86798 * 120.00185 * 175.58820 * 8 6 4 11 11 H 1.48500 * 109.46807 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47237 * 119.99763 * 10 8 6 13 13 H 1.48499 * 109.47091 * 239.99762 * 10 8 6 14 14 C 1.53002 * 109.46990 * 305.14616 * 4 2 1 15 15 C 1.53933 * 113.73374 * 276.72291 * 14 4 2 16 16 N 1.47956 * 86.18349 * 221.92041 * 15 14 4 17 17 C 1.46901 * 111.00114 * 137.58132 * 16 15 14 18 18 C 1.47966 * 90.76129 * 24.69031 * 16 15 14 19 19 H 1.09003 * 109.47331 * 59.99739 * 1 2 3 20 20 H 1.08996 * 109.47195 * 299.99441 * 1 2 3 21 21 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47195 * 240.00559 * 2 1 3 23 23 H 1.09001 * 109.46483 * 54.23347 * 3 2 1 24 24 H 1.09002 * 109.46890 * 174.23093 * 3 2 1 25 25 H 1.08995 * 109.47556 * 294.23176 * 3 2 1 26 26 H 0.96997 * 120.00550 * 180.02562 * 9 8 6 27 27 H 1.09000 * 112.93685 * 48.43283 * 14 4 2 28 28 H 1.08998 * 113.75767 * 336.24241 * 15 14 4 29 29 H 1.09003 * 113.75785 * 107.60187 * 15 14 4 30 30 H 1.08998 * 109.47009 * 320.64304 * 17 16 15 31 31 H 1.09004 * 109.46932 * 80.63922 * 17 16 15 32 32 H 1.08994 * 109.47177 * 200.64460 * 17 16 15 33 33 H 1.08998 * 113.75662 * 220.99055 * 18 16 15 34 34 H 1.09001 * 113.75788 * 89.62442 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1261 -0.6421 1.2964 6 6 1.6444 -2.1741 1.1871 7 1 0.9523 -2.5767 1.9118 8 6 2.1661 -2.9893 0.2050 9 7 2.9400 -2.4811 -0.7289 10 14 1.7734 -4.8155 0.2010 11 1 0.8882 -5.1340 1.3501 12 1 1.0869 -5.1715 -1.0668 13 1 3.0333 -5.5930 0.3169 14 6 1.4271 -0.0786 2.4951 15 6 2.1761 1.1770 2.9767 16 7 1.9866 0.6448 4.3442 17 6 3.2076 0.8048 5.1452 18 6 1.8768 -0.7323 3.8142 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 1.5947 1.9852 0.8339 24 1 3.1251 1.4443 0.1033 25 1 1.7634 1.9257 -0.9370 26 1 3.3068 -3.0544 -1.4200 27 1 0.3482 0.0549 2.4171 28 1 3.2186 1.2148 2.6606 29 1 1.6397 2.1072 2.7892 30 1 4.0792 0.5987 4.5241 31 1 3.2635 1.8259 5.5224 32 1 3.1860 0.1084 5.9834 33 1 1.1012 -1.3276 4.2961 34 1 2.8317 -1.2530 3.7432 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:56 Heat of formation + Delta-G solvation = 16.859306 kcal Electronic energy + Delta-G solvation = -13416.626880 eV Core-core repulsion = 11350.008559 eV Total energy + Delta-G solvation = -2066.618321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.40771 -35.46702 -32.02426 -29.99438 -27.30279 -26.15208 -25.14457 -23.72904 -21.92576 -19.10530 -18.03445 -16.22777 -15.36549 -14.82230 -14.17971 -14.00731 -13.36090 -12.94370 -12.66653 -12.16793 -11.97378 -11.71808 -11.40358 -11.16244 -10.94501 -10.73033 -10.57367 -10.18319 -10.14316 -9.85486 -9.53043 -9.34817 -9.05765 -8.58721 -8.26545 -8.11785 -5.95869 -3.99951 3.30301 3.39243 3.42808 4.45703 4.62166 5.32798 5.39873 5.55607 5.66680 5.80804 6.07973 6.13295 6.17684 6.21735 6.26807 6.36445 6.38843 6.53074 6.58613 6.72590 6.82927 6.90172 6.91634 7.05750 7.15375 7.47488 7.59720 7.67678 7.81326 7.98820 8.17143 8.50259 9.03797 9.63573 11.10146 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032412 B = 0.013269 C = 0.010692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.671680 B = 2109.724444 C = 2618.229339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.064 3.936 5 H 0.025 0.975 6 C -0.501 4.501 7 H 0.055 0.945 8 C 0.061 3.939 9 N -0.890 5.890 10 Si 0.884 3.116 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.286 1.286 14 C -0.097 4.097 15 C 0.002 3.998 16 N -0.498 5.498 17 C -0.008 4.008 18 C 0.016 3.984 19 H 0.023 0.977 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.095 0.905 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.030 0.970 26 H 0.258 0.742 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 4.971 4.690 6.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.202 4.202 4 C 0.045 3.955 5 H 0.043 0.957 6 C -0.540 4.540 7 H 0.073 0.927 8 C -0.140 4.140 9 N -0.529 5.529 10 Si 0.712 3.288 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.115 4.115 15 C -0.126 4.126 16 N -0.221 5.221 17 C -0.158 4.158 18 C -0.112 4.112 19 H 0.042 0.958 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.220 5.187 4.988 7.299 hybrid contribution 0.669 -1.320 -0.484 1.557 sum -0.551 3.867 4.504 5.962 Atomic orbital electron populations 1.21749 0.97722 1.01098 0.98121 1.21145 0.93722 0.92734 1.03394 1.21996 1.00061 0.98946 0.99188 1.18732 0.95088 0.93608 0.88092 0.95673 1.21136 1.26318 0.93751 1.12750 0.92662 1.24940 0.95351 0.98106 0.95562 1.69899 1.33871 1.34816 1.14311 0.86665 0.78031 0.86232 0.77854 1.19807 1.21225 1.21229 1.23102 0.99897 0.92749 0.95776 1.24159 0.99948 0.99486 0.89024 1.68456 1.32192 1.10115 1.11304 1.22794 0.92743 1.01492 0.98756 1.23836 1.01094 0.90547 0.95756 0.95807 0.94476 0.92355 0.88689 0.93909 0.94036 0.95084 0.93221 0.89584 0.91841 0.90775 0.95029 0.92187 0.92138 0.90726 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.59 37.16 0.32 -2.36 16 2 C -0.09 -2.05 2.58 -90.62 -0.23 -2.28 16 3 C -0.14 -2.79 8.33 37.16 0.31 -2.48 16 4 C 0.06 1.49 1.36 -91.77 -0.12 1.37 16 5 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 6 C -0.50 -13.03 7.01 -34.44 -0.24 -13.27 16 7 H 0.06 1.44 7.64 -52.49 -0.40 1.04 16 8 C 0.06 1.64 5.34 -17.82 -0.10 1.55 16 9 N -0.89 -24.85 11.51 55.43 0.64 -24.21 16 10 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 C -0.10 -1.96 2.71 -89.69 -0.24 -2.20 16 15 C 0.00 0.04 5.58 -2.77 -0.02 0.03 16 16 N -0.50 -8.87 6.56 -246.60 -1.62 -10.49 16 17 C -0.01 -0.13 9.65 60.07 0.58 0.45 16 18 C 0.02 0.31 6.94 -2.76 -0.02 0.29 16 19 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.04 0.71 6.13 -51.93 -0.32 0.39 16 21 H 0.06 1.29 7.39 -51.93 -0.38 0.91 16 22 H 0.10 2.47 6.22 -51.93 -0.32 2.15 16 23 H 0.04 0.76 5.67 -51.93 -0.29 0.46 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.09 1.77 6.00 -51.93 -0.31 1.46 16 28 H 0.06 1.16 7.43 -51.93 -0.39 0.78 16 29 H 0.07 1.26 7.27 -51.93 -0.38 0.88 16 30 H 0.03 0.48 7.62 -51.93 -0.40 0.09 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.38 7.88 -51.93 -0.41 0.97 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -26.76 261.38 -7.51 -34.27 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.68 Total: -0.53 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 0.24 Total: -18.91 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: -0.98 Total: -34.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.76 -7.51 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.126 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds