Wall clock time and date at job start Mon Mar 30 2020 20:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47429 * 2 1 4 4 C 1.53004 * 109.46893 * 119.99974 * 2 1 3 5 5 H 1.09004 * 109.46628 * 185.38783 * 4 2 1 6 6 C 1.50695 * 109.47496 * 305.39071 * 4 2 1 7 7 H 1.07999 * 120.00028 * 64.67603 * 6 4 2 8 8 C 1.37881 * 119.99837 * 244.68422 * 6 4 2 9 9 N 1.31514 * 119.99739 * 187.14125 * 8 6 4 10 10 Si 1.86798 * 120.00372 * 7.14458 * 8 6 4 11 11 H 1.48497 * 109.46911 * 267.81266 * 10 8 6 12 12 H 1.48499 * 109.47098 * 27.80970 * 10 8 6 13 13 H 1.48498 * 109.47429 * 147.81081 * 10 8 6 14 14 C 1.53006 * 109.47208 * 65.39454 * 4 2 1 15 15 C 1.53931 * 113.73459 * 158.86502 * 14 4 2 16 16 N 1.48186 * 86.10031 * 221.95589 * 15 14 4 17 17 C 1.46899 * 111.07211 * 137.52162 * 16 15 14 18 18 C 1.47966 * 90.79977 * 24.59974 * 16 15 14 19 19 H 1.08997 * 109.47477 * 64.40194 * 1 2 3 20 20 H 1.08995 * 109.47610 * 184.40863 * 1 2 3 21 21 H 1.09004 * 109.46898 * 304.40781 * 1 2 3 22 22 H 1.09002 * 109.47298 * 239.99989 * 2 1 3 23 23 H 1.09000 * 109.47190 * 184.18488 * 3 2 1 24 24 H 1.08998 * 109.47126 * 304.18451 * 3 2 1 25 25 H 1.09003 * 109.47012 * 64.18479 * 3 2 1 26 26 H 0.97002 * 120.00270 * 179.97438 * 9 8 6 27 27 H 1.09004 * 112.93344 * 290.43139 * 14 4 2 28 28 H 1.08999 * 113.75888 * 336.23420 * 15 14 4 29 29 H 1.08999 * 113.76039 * 107.60205 * 15 14 4 30 30 H 1.08997 * 109.47260 * 320.56710 * 17 16 15 31 31 H 1.09005 * 109.47136 * 80.56398 * 17 16 15 32 32 H 1.09001 * 109.47017 * 200.56110 * 17 16 15 33 33 H 1.09001 * 113.75693 * 221.08397 * 18 16 15 34 34 H 1.09004 * 113.75492 * 89.72256 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1256 -0.6384 1.2988 6 6 1.4316 -0.0922 2.4761 7 1 0.3652 -0.1465 2.6386 8 6 2.2363 0.5529 3.3911 9 7 1.7295 0.9786 4.5276 10 14 4.0464 0.8225 3.0166 11 1 4.8384 -0.3096 3.5609 12 1 4.2414 0.9013 1.5466 13 1 4.4985 2.0900 3.6446 14 6 1.6436 -2.1977 1.1833 15 6 2.5036 -3.1105 2.0758 16 7 2.4978 -4.0591 0.9374 17 6 3.8287 -4.6460 0.7322 18 6 2.2551 -2.9504 -0.0120 19 1 -0.3634 0.4440 -0.9267 20 1 -0.3634 -1.0245 0.0790 21 1 -0.3633 0.5807 0.8479 22 1 1.8933 -0.5138 -0.8900 23 1 3.1274 1.4433 -0.0750 24 1 1.6167 1.9775 -0.8501 25 1 1.7392 1.9342 0.9251 26 1 2.2957 1.4321 5.1715 27 1 0.5712 -2.3552 1.2989 28 1 3.4886 -2.7020 2.3020 29 1 1.9819 -3.4793 2.9589 30 1 4.5905 -3.8817 0.8854 31 1 3.9811 -5.4584 1.4429 32 1 3.9021 -5.0337 -0.2839 33 1 1.5351 -3.1917 -0.7940 34 1 3.1672 -2.4951 -0.3978 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:57 Heat of formation + Delta-G solvation = 17.066179 kcal Electronic energy + Delta-G solvation = -13441.699958 eV Core-core repulsion = 11375.090607 eV Total energy + Delta-G solvation = -2066.609351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.45225 -35.73496 -32.08725 -30.31850 -27.37077 -26.33463 -25.47970 -23.80678 -21.66908 -19.43789 -18.09063 -16.86448 -15.18313 -14.96580 -14.31961 -13.85068 -13.78481 -13.20844 -12.68681 -12.29002 -12.19884 -12.10500 -11.40005 -11.21951 -11.08550 -10.78283 -10.57406 -10.48884 -10.25202 -9.94446 -9.58143 -9.49103 -9.05693 -8.78973 -8.49417 -8.24223 -6.04866 -4.00404 3.26027 3.36867 3.37580 4.43163 4.51373 5.15198 5.31788 5.45854 5.58695 5.70707 5.96554 5.98185 6.01032 6.04270 6.06669 6.10618 6.25264 6.48331 6.49920 6.57478 6.66622 6.74670 6.77985 6.88196 7.05124 7.18882 7.26575 7.39465 7.41740 7.56229 7.84263 8.57475 9.02356 9.59836 11.08553 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.015746 C = 0.012670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.756813 B = 1777.795690 C = 2209.464450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.021 3.979 5 H 0.032 0.968 6 C -0.493 4.493 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.902 5.902 10 Si 0.862 3.138 11 H -0.282 1.282 12 H -0.257 1.257 13 H -0.291 1.291 14 C -0.087 4.087 15 C 0.014 3.986 16 N -0.494 5.494 17 C -0.009 4.009 18 C -0.005 4.005 19 H 0.027 0.973 20 H 0.044 0.956 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.261 0.739 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -4.839 -8.036 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 C -0.198 4.198 4 C 0.002 3.998 5 H 0.051 0.949 6 C -0.530 4.530 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.540 5.540 10 Si 0.690 3.310 11 H -0.209 1.209 12 H -0.182 1.182 13 H -0.218 1.218 14 C -0.106 4.106 15 C -0.114 4.114 16 N -0.216 5.216 17 C -0.159 4.159 18 C -0.134 4.134 19 H 0.046 0.954 20 H 0.063 0.937 21 H 0.085 0.915 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.393 -5.328 -7.850 9.785 hybrid contribution 1.819 0.784 -0.051 1.981 sum 4.212 -4.544 -7.901 10.041 Atomic orbital electron populations 1.21724 0.96216 1.00861 1.00111 1.21108 0.95571 0.95643 0.97778 1.21833 0.99303 0.97327 1.01306 1.19325 0.95947 0.90042 0.94496 0.94944 1.20903 0.95830 1.33481 1.02835 0.90603 1.25046 0.97583 0.95554 0.94668 1.69910 1.36126 1.40227 1.07769 0.87145 0.86879 0.77695 0.79250 1.20865 1.18175 1.21779 1.23036 0.99600 0.96241 0.91695 1.23948 0.99918 0.92262 0.95283 1.68479 1.25612 1.22408 1.05118 1.22812 0.91662 0.99889 1.01513 1.24072 1.00161 0.92049 0.97083 0.95411 0.93703 0.91518 0.94486 0.94310 0.94919 0.91128 0.92873 0.89247 0.92037 0.89851 0.95184 0.91820 0.92142 0.90521 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.58 37.15 0.32 -2.15 16 2 C -0.08 -1.62 2.60 -90.62 -0.24 -1.85 16 3 C -0.14 -2.78 8.29 37.15 0.31 -2.47 16 4 C 0.02 0.47 1.23 -91.77 -0.11 0.35 16 5 H 0.03 0.74 4.56 -51.93 -0.24 0.51 16 6 C -0.49 -12.80 6.78 -34.44 -0.23 -13.03 16 7 H 0.08 2.16 7.23 -52.49 -0.38 1.78 16 8 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 9 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 10 Si 0.86 20.92 26.52 -169.99 -4.51 16.41 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -5.89 5.12 56.52 0.29 -5.60 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C -0.09 -1.71 2.69 -89.69 -0.24 -1.95 16 15 C 0.01 0.27 7.52 -2.64 -0.02 0.25 16 16 N -0.49 -8.66 6.55 -246.40 -1.61 -10.27 16 17 C -0.01 -0.14 9.65 60.06 0.58 0.44 16 18 C 0.00 -0.08 6.59 -2.76 -0.02 -0.10 16 19 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.04 0.80 6.67 -51.93 -0.35 0.46 16 21 H 0.07 1.38 6.83 -51.93 -0.35 1.03 16 22 H 0.04 0.67 7.34 -51.93 -0.38 0.29 16 23 H 0.04 0.76 6.90 -51.93 -0.36 0.40 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.56 7.23 -51.93 -0.38 1.18 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.09 1.83 7.15 -51.93 -0.37 1.46 16 28 H 0.06 1.24 7.47 -51.93 -0.39 0.85 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.03 0.45 7.63 -51.93 -0.40 0.05 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 LS Contribution 259.80 15.07 3.92 3.92 Total: -1.00 -27.77 259.80 -6.97 -34.74 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.78 Total: -0.18 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 0.25 Total: -18.61 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.84 Total: -36.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.51 Total: 16.41 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.77 -6.97 -34.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.802 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds