Wall clock time and date at job start Mon Mar 30 2020 20:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47429 * 2 1 4 4 C 1.53004 * 109.46893 * 119.99974 * 2 1 3 5 5 H 1.09004 * 109.46628 * 185.38783 * 4 2 1 6 6 C 1.50695 * 109.47496 * 305.39071 * 4 2 1 7 7 H 1.07999 * 120.00028 * 64.67603 * 6 4 2 8 8 C 1.37881 * 119.99837 * 244.68422 * 6 4 2 9 9 N 1.31514 * 119.99739 * 187.14125 * 8 6 4 10 10 Si 1.86798 * 120.00372 * 7.14458 * 8 6 4 11 11 H 1.48497 * 109.46911 * 267.81266 * 10 8 6 12 12 H 1.48499 * 109.47098 * 27.80970 * 10 8 6 13 13 H 1.48498 * 109.47429 * 147.81081 * 10 8 6 14 14 C 1.53006 * 109.47208 * 65.39454 * 4 2 1 15 15 C 1.53931 * 113.73459 * 158.86502 * 14 4 2 16 16 N 1.48186 * 86.10031 * 221.95589 * 15 14 4 17 17 C 1.46899 * 111.07211 * 137.52162 * 16 15 14 18 18 C 1.47966 * 90.79977 * 24.59974 * 16 15 14 19 19 H 1.08997 * 109.47477 * 64.40194 * 1 2 3 20 20 H 1.08995 * 109.47610 * 184.40863 * 1 2 3 21 21 H 1.09004 * 109.46898 * 304.40781 * 1 2 3 22 22 H 1.09002 * 109.47298 * 239.99989 * 2 1 3 23 23 H 1.09000 * 109.47190 * 184.18488 * 3 2 1 24 24 H 1.08998 * 109.47126 * 304.18451 * 3 2 1 25 25 H 1.09003 * 109.47012 * 64.18479 * 3 2 1 26 26 H 0.97002 * 120.00270 * 179.97438 * 9 8 6 27 27 H 1.09004 * 112.93344 * 290.43139 * 14 4 2 28 28 H 1.08999 * 113.75888 * 336.23420 * 15 14 4 29 29 H 1.08999 * 113.76039 * 107.60205 * 15 14 4 30 30 H 1.08997 * 109.47260 * 320.56710 * 17 16 15 31 31 H 1.09005 * 109.47136 * 80.56398 * 17 16 15 32 32 H 1.09001 * 109.47017 * 200.56110 * 17 16 15 33 33 H 1.09001 * 113.75693 * 221.08397 * 18 16 15 34 34 H 1.09004 * 113.75492 * 89.72256 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1256 -0.6384 1.2988 6 6 1.4316 -0.0922 2.4761 7 1 0.3652 -0.1465 2.6386 8 6 2.2363 0.5529 3.3911 9 7 1.7295 0.9786 4.5276 10 14 4.0464 0.8225 3.0166 11 1 4.8384 -0.3096 3.5609 12 1 4.2414 0.9013 1.5466 13 1 4.4985 2.0900 3.6446 14 6 1.6436 -2.1977 1.1833 15 6 2.5036 -3.1105 2.0758 16 7 2.4978 -4.0591 0.9374 17 6 3.8287 -4.6460 0.7322 18 6 2.2551 -2.9504 -0.0120 19 1 -0.3634 0.4440 -0.9267 20 1 -0.3634 -1.0245 0.0790 21 1 -0.3633 0.5807 0.8479 22 1 1.8933 -0.5138 -0.8900 23 1 3.1274 1.4433 -0.0750 24 1 1.6167 1.9775 -0.8501 25 1 1.7392 1.9342 0.9251 26 1 2.2957 1.4321 5.1715 27 1 0.5712 -2.3552 1.2989 28 1 3.4886 -2.7020 2.3020 29 1 1.9819 -3.4793 2.9589 30 1 4.5905 -3.8817 0.8854 31 1 3.9811 -5.4584 1.4429 32 1 3.9021 -5.0337 -0.2839 33 1 1.5351 -3.1917 -0.7940 34 1 3.1672 -2.4951 -0.3978 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:57 Heat of formation + Delta-G solvation = -1.859704 kcal Electronic energy + Delta-G solvation = -13442.520646 eV Core-core repulsion = 11375.090607 eV Total energy + Delta-G solvation = -2067.430038 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93097 -37.36628 -34.13855 -31.76862 -29.08084 -27.87687 -26.93277 -25.55161 -23.18296 -21.01842 -19.75420 -18.84134 -16.73439 -16.49155 -15.80732 -15.58191 -15.41228 -14.83349 -14.39760 -13.87512 -13.66424 -13.56709 -13.13811 -12.90479 -12.65029 -12.42032 -12.13282 -12.11501 -11.75608 -11.68969 -11.34737 -11.10603 -10.80117 -10.61443 -10.45649 -9.67793 -8.18569 -6.15486 1.31834 1.36949 1.44903 2.39824 3.11732 3.18078 3.86117 3.97165 4.22415 4.38705 4.45683 4.48852 4.54551 4.61722 4.65969 4.84877 4.91794 4.96557 4.98518 5.00313 5.12959 5.17638 5.30655 5.39914 5.40833 5.57578 5.62974 5.70470 5.76664 5.93339 6.20210 6.47344 6.90284 7.47106 8.98728 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.015746 C = 0.012670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.756813 B = 1777.795690 C = 2209.464450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.140 4.140 4 C 0.022 3.978 5 H 0.028 0.972 6 C -0.474 4.474 7 H 0.037 0.963 8 C 0.015 3.985 9 N -0.955 5.955 10 Si 0.915 3.085 11 H -0.280 1.280 12 H -0.231 1.231 13 H -0.298 1.298 14 C -0.093 4.093 15 C 0.009 3.991 16 N -0.498 5.498 17 C -0.011 4.011 18 C 0.010 3.990 19 H 0.055 0.945 20 H 0.048 0.952 21 H 0.033 0.967 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.259 0.741 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -5.827 -10.763 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C -0.197 4.197 4 C 0.002 3.998 5 H 0.046 0.954 6 C -0.512 4.512 7 H 0.055 0.945 8 C -0.180 4.180 9 N -0.597 5.597 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.154 1.154 13 H -0.225 1.225 14 C -0.112 4.112 15 C -0.119 4.119 16 N -0.220 5.220 17 C -0.160 4.160 18 C -0.118 4.118 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.647 -6.333 -10.612 12.885 hybrid contribution 1.331 1.046 0.781 1.865 sum 4.979 -5.286 -9.831 12.222 Atomic orbital electron populations 1.21647 0.95729 1.00847 1.00143 1.21112 0.96019 0.95584 0.97470 1.21811 0.99637 0.97386 1.00872 1.19312 0.95294 0.91479 0.93683 0.95375 1.21097 0.94041 1.32063 1.04045 0.94495 1.25757 1.01778 0.95967 0.94530 1.70063 1.37757 1.42594 1.09299 0.86279 0.81971 0.77130 0.80484 1.20566 1.15410 1.22546 1.22923 0.99142 0.94942 0.94198 1.23891 0.99294 0.93042 0.95708 1.68445 1.27557 1.21925 1.04108 1.22893 0.89950 0.99998 1.03198 1.24025 1.00618 0.90947 0.96251 0.92581 0.93270 0.94761 0.91451 0.93980 0.92078 0.94392 0.93216 0.90427 0.92746 0.91078 0.95214 0.90956 0.89910 0.88557 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.58 71.98 0.62 -3.89 16 2 C -0.08 -3.05 2.60 -10.80 -0.03 -3.08 16 3 C -0.14 -5.18 8.29 71.98 0.60 -4.58 16 4 C 0.02 0.92 1.23 -11.54 -0.01 0.90 16 5 H 0.03 1.22 4.56 -2.38 -0.01 1.21 16 6 C -0.47 -25.17 6.78 25.60 0.17 -24.99 16 7 H 0.04 2.21 7.23 -2.91 -0.02 2.19 16 8 C 0.02 0.86 5.43 84.66 0.46 1.32 16 9 N -0.96 -59.00 13.96 21.45 0.30 -58.70 16 10 Si 0.91 43.17 26.52 68.60 1.82 44.99 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.23 -9.80 5.12 99.48 0.51 -9.29 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 C -0.09 -3.53 2.69 -10.15 -0.03 -3.56 16 15 C 0.01 0.35 7.52 86.36 0.65 1.00 16 16 N -0.50 -16.07 6.55 -933.49 -6.12 -22.19 16 17 C -0.01 -0.30 9.65 127.69 1.23 0.93 16 18 C 0.01 0.31 6.59 86.41 0.57 0.88 16 19 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.05 1.68 6.67 -2.39 -0.02 1.67 16 21 H 0.03 1.42 6.83 -2.39 -0.02 1.40 16 22 H 0.07 2.12 7.34 -2.39 -0.02 2.10 16 23 H 0.04 1.50 6.90 -2.39 -0.02 1.49 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.63 7.23 -2.39 -0.02 1.62 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.08 3.13 7.15 -2.39 -0.02 3.11 16 28 H 0.05 2.12 7.47 -2.39 -0.02 2.10 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.03 0.78 7.63 -2.39 -0.02 0.77 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.06 7.88 -2.38 -0.02 2.04 16 Total: -1.00 -60.64 259.80 1.08 -59.56 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.85 Total: 11.40 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.23 Total: -35.07 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -5.82 Total: -80.89 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.82 Total: 44.99 kcal Total: -60.64 1.08 -59.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds