Wall clock time and date at job start Mon Mar 30 2020 20:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48500 * 109.47283 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47038 * 120.00031 * 3 2 1 7 7 C 1.37877 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99785 * 146.80806 * 7 2 1 9 9 C 1.50700 * 119.99707 * 327.08271 * 7 2 1 10 10 C 1.52997 * 108.85585 * 336.06689 * 9 7 2 11 11 N 1.46900 * 109.47190 * 305.30033 * 10 9 7 12 12 C 1.50469 * 108.87710 * 217.50478 * 9 7 2 13 13 C 1.54139 * 108.57925 * 333.51913 * 12 9 7 14 14 C 1.45554 * 112.32223 * 279.90042 * 13 12 9 15 15 C 1.54238 * 112.40445 * 61.93969 * 14 13 12 16 16 C 1.50479 * 108.51751 * 280.00575 * 15 14 13 17 17 C 1.54063 * 108.87552 * 94.62715 * 9 7 2 18 18 H 0.96995 * 120.00413 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.46965 * 65.29612 * 10 9 7 20 20 H 1.08998 * 109.47268 * 185.29718 * 10 9 7 21 21 H 1.00897 * 111.00220 * 65.32619 * 11 10 9 22 22 H 1.00907 * 111.00100 * 189.28102 * 11 10 9 23 23 H 1.08999 * 109.62879 * 93.08218 * 12 9 7 24 24 H 1.08996 * 109.63107 * 213.66316 * 12 9 7 25 25 H 1.09007 * 108.94027 * 159.17468 * 13 12 9 26 26 H 1.08997 * 108.86610 * 40.57595 * 13 12 9 27 27 H 1.08996 * 108.89364 * 301.18717 * 14 13 12 28 28 H 1.08995 * 108.89604 * 182.68929 * 14 13 12 29 29 H 1.09002 * 109.63012 * 160.30139 * 15 14 13 30 30 H 1.09002 * 109.63108 * 39.71204 * 15 14 13 31 31 H 1.08998 * 108.87506 * 333.38258 * 16 15 14 32 32 H 1.08999 * 108.87691 * 214.93320 * 16 15 14 33 33 H 1.08995 * 108.81491 * 199.91803 * 17 9 7 34 34 H 1.09000 * 108.81806 * 318.31198 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 2.9524 -1.2700 -0.5126 9 6 1.4326 -2.3947 0.7082 10 6 0.4672 -1.9146 1.7937 11 7 1.1583 -0.9686 2.6801 12 6 2.5554 -3.1572 1.3578 13 6 3.8529 -2.8860 0.5711 14 6 3.9458 -3.6927 -0.6369 15 6 2.8072 -3.3928 -1.6332 16 6 1.5724 -4.1253 -1.1823 17 6 0.6533 -3.2496 -0.3093 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3855 -1.4200 1.3287 20 1 0.1195 -2.7689 2.3744 21 1 1.4140 -0.1285 2.1833 22 1 0.5946 -0.7531 3.4889 23 1 2.6780 -2.8220 2.3876 24 1 2.3314 -4.2238 1.3412 25 1 4.7073 -3.1082 1.2104 26 1 3.8838 -1.8321 0.2948 27 1 3.9054 -4.7465 -0.3615 28 1 4.9011 -3.4929 -1.1222 29 1 3.0922 -3.7338 -2.6285 30 1 2.6104 -2.3209 -1.6525 31 1 1.8724 -5.0024 -0.6089 32 1 1.0167 -4.4535 -2.0607 33 1 -0.0383 -3.8958 0.2311 34 1 0.0804 -2.5878 -0.9590 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:02 Heat of formation + Delta-G solvation = -6.018027 kcal Electronic energy + Delta-G solvation = -14049.272230 eV Core-core repulsion = 11981.661873 eV Total energy + Delta-G solvation = -2067.610357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37910 -36.19175 -33.38574 -32.86992 -31.69395 -27.46599 -25.91217 -25.25248 -22.40359 -21.25007 -19.71121 -17.54554 -16.77093 -16.47446 -15.81833 -15.47293 -15.10537 -14.45305 -14.37674 -13.69713 -13.42274 -13.24648 -12.88285 -12.70569 -12.55525 -12.38390 -11.97990 -11.85452 -11.11494 -11.08574 -10.84875 -10.68440 -10.59336 -10.20556 -9.67100 -9.06179 -7.98852 -5.81979 1.42491 1.49981 1.56380 2.52298 3.11890 4.14091 4.20137 4.35751 4.39241 4.71269 4.74727 4.85998 4.92162 4.97934 5.09289 5.13199 5.15436 5.38176 5.47598 5.57376 5.64026 5.65018 5.70983 5.78855 5.83112 5.95355 6.08284 6.14599 6.34760 6.66816 6.78374 6.90796 7.20754 7.64463 8.96110 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.017325 C = 0.015659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.771684 B = 1615.807370 C = 1787.671512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.039 3.961 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.085 0.915 9 C 0.067 3.933 10 C 0.067 3.933 11 N -0.840 5.840 12 C -0.083 4.083 13 C -0.132 4.132 14 C -0.097 4.097 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.092 4.092 18 H 0.253 0.747 19 H 0.048 0.952 20 H 0.023 0.977 21 H 0.336 0.664 22 H 0.319 0.681 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -4.478 0.335 5.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.160 4.160 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.103 0.897 9 C 0.066 3.934 10 C -0.064 4.064 11 N -0.369 5.369 12 C -0.121 4.121 13 C -0.169 4.169 14 C -0.135 4.135 15 C -0.171 4.171 16 C -0.134 4.134 17 C -0.131 4.131 18 H 0.063 0.937 19 H 0.066 0.934 20 H 0.042 0.958 21 H 0.151 0.849 22 H 0.128 0.872 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.968 -4.934 0.395 6.344 hybrid contribution -0.769 1.776 -0.158 1.942 sum 3.199 -3.158 0.237 4.502 Atomic orbital electron populations 1.70298 1.06928 1.26256 1.48664 1.25305 0.94437 1.00580 0.95724 0.86689 0.79995 0.82608 0.78898 1.20507 1.22417 1.19677 1.21693 1.05586 0.94284 1.32825 0.89726 1.17903 0.91675 0.92955 0.90872 1.21881 0.97873 0.93386 0.93269 1.58925 1.47680 1.19186 1.11140 1.21128 0.95584 0.96786 0.98585 1.20709 0.96563 1.03167 0.96446 1.20315 0.97856 0.99205 0.96105 1.21626 0.94847 1.03489 0.97130 1.21117 0.96559 0.97702 0.98063 1.21914 0.97099 0.96262 0.97804 0.93725 0.93410 0.95820 0.84907 0.87161 0.93177 0.94915 0.94227 0.90071 0.93150 0.92769 0.92858 0.89917 0.93040 0.93677 0.96250 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.41 10.89 21.45 0.23 -46.17 16 2 C 0.04 1.96 3.04 84.65 0.26 2.22 16 3 Si 0.89 40.34 28.81 68.60 1.98 42.31 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.51 -24.62 4.55 25.60 0.12 -24.50 16 8 H 0.09 4.12 3.67 -2.91 -0.01 4.11 16 9 C 0.07 3.02 0.43 -53.39 -0.02 3.00 16 10 C 0.07 3.09 4.82 86.30 0.42 3.51 16 11 N -0.84 -36.84 8.54 -186.73 -1.60 -38.44 16 12 C -0.08 -3.44 4.92 30.16 0.15 -3.29 16 13 C -0.13 -5.04 5.15 28.71 0.15 -4.90 16 14 C -0.10 -3.32 5.24 28.74 0.15 -3.17 16 15 C -0.13 -4.93 5.58 30.20 0.17 -4.76 16 16 C -0.10 -3.62 5.31 30.14 0.16 -3.46 16 17 C -0.09 -4.06 4.82 31.32 0.15 -3.90 16 18 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 19 H 0.05 2.48 5.63 -2.39 -0.01 2.47 16 20 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.34 15.74 5.51 -89.70 -0.49 15.24 16 22 H 0.32 12.38 9.08 -89.69 -0.81 11.57 16 23 H 0.05 2.16 7.04 -2.39 -0.02 2.14 16 24 H 0.03 1.27 6.97 -2.39 -0.02 1.26 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 3.47 4.61 -2.39 -0.01 3.46 16 27 H 0.05 1.59 7.47 -2.39 -0.02 1.58 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 3.58 4.39 -2.39 -0.01 3.57 16 31 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 34 H 0.03 1.56 7.97 -2.39 -0.02 1.54 16 Total: -1.00 -50.97 239.38 2.10 -48.87 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.21 Total: 32.69 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 1.69 Total: -39.26 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.36 Total: -84.61 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.98 Total: 42.31 kcal Total: -50.97 2.10 -48.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.853 kcal (2) G-P(sol) polarization free energy of solvation -50.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds