Wall clock time and date at job start Mon Mar 30 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 C 1.53002 * 109.47283 * 120.00008 * 2 1 3 5 5 H 1.09003 * 109.46637 * 302.57068 * 4 2 1 6 6 C 1.52997 * 109.46992 * 62.56861 * 4 2 1 7 7 H 1.08998 * 109.46897 * 173.01472 * 6 4 2 8 8 N 1.46900 * 109.46828 * 53.01492 * 6 4 2 9 9 C 1.50699 * 109.47344 * 293.01674 * 6 4 2 10 10 H 1.07999 * 120.00241 * 115.45011 * 9 6 4 11 11 C 1.37880 * 119.99654 * 295.44750 * 9 6 4 12 12 N 1.31514 * 120.00160 * 352.45457 * 11 9 6 13 13 Si 1.86803 * 119.99740 * 172.44987 * 11 9 6 14 14 H 1.48501 * 109.47048 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.47075 * 300.00010 * 13 11 9 16 16 H 1.48502 * 109.47080 * 60.00248 * 13 11 9 17 17 C 1.53000 * 109.47266 * 182.57375 * 4 2 1 18 18 C 1.52994 * 117.50106 * 135.92608 * 17 4 2 19 19 C 1.52997 * 117.49973 * 67.30109 * 17 4 2 20 20 H 1.08998 * 109.47291 * 168.37345 * 1 2 3 21 21 H 1.09004 * 109.46954 * 288.37272 * 1 2 3 22 22 H 1.09001 * 109.47382 * 48.36662 * 1 2 3 23 23 H 1.08994 * 109.47104 * 240.00156 * 2 1 3 24 24 H 1.08999 * 109.46899 * 189.29834 * 3 2 1 25 25 H 1.09000 * 109.46923 * 309.29310 * 3 2 1 26 26 H 1.08992 * 109.47137 * 69.29291 * 3 2 1 27 27 H 1.00908 * 110.99928 * 173.16091 * 8 6 4 28 28 H 1.00897 * 111.00427 * 297.11095 * 8 6 4 29 29 H 0.97001 * 120.00267 * 355.20453 * 12 11 9 30 30 H 1.08999 * 115.54784 * 281.63477 * 17 4 2 31 31 H 1.09000 * 117.49787 * 0.02562 * 18 17 4 32 32 H 1.08996 * 117.50007 * 145.01675 * 18 17 4 33 33 H 1.09000 * 117.50108 * 214.98150 * 19 17 4 34 34 H 1.08999 * 117.50141 * 0.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6395 -0.2347 2.1386 6 6 1.5835 -2.1812 1.2173 7 1 2.0479 -2.7251 2.0398 8 7 1.9806 -2.7905 -0.0590 9 6 0.0843 -2.2419 1.3579 10 1 -0.5193 -2.6212 0.5466 11 6 -0.5168 -1.8133 2.5225 12 7 0.2202 -1.4918 3.5631 13 14 -2.3780 -1.6892 2.6219 14 1 -2.7706 -1.2069 3.9704 15 1 -2.8661 -0.7351 1.5940 16 1 -2.9769 -3.0265 2.3802 17 6 3.5686 -0.6654 1.2820 18 6 4.2348 -0.3301 2.6179 19 6 4.2213 0.7028 1.4892 20 1 -0.3634 -1.0065 -0.2071 21 1 -0.3633 0.3239 0.9753 22 1 -0.3634 0.6827 -0.7681 23 1 1.8932 -0.5138 -0.8899 24 1 3.1172 1.4470 -0.1660 25 1 1.5475 2.0020 -0.7953 26 1 1.8185 1.9062 0.9612 27 1 1.7906 -3.7816 -0.0611 28 1 1.5258 -2.3335 -0.8350 29 1 1.1811 -1.6219 3.5358 30 1 4.0790 -1.3726 0.6283 31 1 3.5841 -0.1497 3.4735 32 1 5.1836 -0.8169 2.8433 33 1 5.1612 0.8956 0.9721 34 1 3.5617 1.5631 1.6026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260991923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:12 Heat of formation + Delta-G solvation = 11.719773 kcal Electronic energy + Delta-G solvation = -13726.542938 eV Core-core repulsion = 11659.701750 eV Total energy + Delta-G solvation = -2066.841188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49433 -35.05147 -32.78405 -31.49515 -27.10458 -26.49362 -24.70648 -21.67033 -21.16548 -20.12732 -18.41615 -16.90558 -15.32088 -14.61244 -14.03545 -13.88463 -13.64517 -12.78066 -12.43462 -12.18263 -12.06357 -11.47820 -10.99378 -10.83436 -10.73719 -10.61890 -10.27222 -10.16231 -9.90125 -9.85142 -9.52075 -9.31682 -8.97499 -8.87088 -8.17724 -7.37149 -6.29006 -4.00639 3.40202 3.42279 3.59508 4.50971 4.54442 5.31449 5.46928 5.63380 5.73037 5.84837 5.93901 6.00080 6.03208 6.16934 6.34652 6.49920 6.58779 6.63320 6.64378 6.74986 6.78354 6.98542 7.04064 7.13508 7.29594 7.42217 7.59473 7.69142 8.00890 8.20879 8.58912 8.64137 8.82546 9.63289 11.01763 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.014092 C = 0.013391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.145749 B = 1986.526289 C = 2090.396449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.151 4.151 4 C -0.042 4.042 5 H 0.074 0.926 6 C 0.208 3.792 7 H 0.026 0.974 8 N -0.849 5.849 9 C -0.616 4.616 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.906 5.906 13 Si 1.048 2.952 14 H -0.283 1.283 15 H -0.285 1.285 16 H -0.290 1.290 17 C -0.122 4.122 18 C -0.191 4.191 19 C -0.199 4.199 20 H 0.083 0.917 21 H 0.051 0.949 22 H 0.013 0.987 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.322 0.678 28 H 0.324 0.676 29 H 0.273 0.727 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 3.061 -4.975 6.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.208 4.208 4 C -0.061 4.061 5 H 0.093 0.907 6 C 0.098 3.902 7 H 0.043 0.957 8 N -0.375 5.375 9 C -0.655 4.655 10 H 0.066 0.934 11 C -0.176 4.176 12 N -0.542 5.542 13 Si 0.876 3.124 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.217 1.217 17 C -0.140 4.140 18 C -0.228 4.228 19 C -0.236 4.236 20 H 0.102 0.898 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.801 3.777 -3.772 6.028 hybrid contribution 0.193 -0.661 -0.984 1.201 sum 2.994 3.117 -4.756 6.426 Atomic orbital electron populations 1.22159 0.95092 1.02309 0.99754 1.20800 0.95989 0.93844 0.98333 1.22234 1.00760 0.97671 1.00110 1.20927 0.89061 0.98615 0.97523 0.90741 1.19034 0.93329 0.90252 0.87601 0.95652 1.59281 1.65524 1.06589 1.06083 1.22553 0.92843 1.47199 1.02912 0.93410 1.25511 1.06011 0.93806 0.92269 1.70765 1.08344 1.44421 1.30677 0.83863 0.75721 0.76499 0.76273 1.20851 1.21171 1.21701 1.22479 0.97151 0.96362 0.97991 1.22946 1.02024 1.04314 0.93541 1.23173 1.02065 0.94701 1.03679 0.89826 0.92998 0.96800 0.92435 0.92297 0.94487 0.93509 0.86878 0.86424 0.91525 0.88138 0.89151 0.90223 0.90266 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.75 37.15 0.29 -2.60 16 2 C -0.07 -1.42 2.07 -90.62 -0.19 -1.60 16 3 C -0.15 -2.65 7.50 37.16 0.28 -2.37 16 4 C -0.04 -0.91 1.33 -90.62 -0.12 -1.03 16 5 H 0.07 1.87 6.11 -51.93 -0.32 1.56 16 6 C 0.21 4.93 2.11 -68.87 -0.15 4.78 16 7 H 0.03 0.68 7.48 -51.93 -0.39 0.30 16 8 N -0.85 -17.42 8.55 -5.66 -0.05 -17.47 16 9 C -0.62 -15.78 5.26 -34.44 -0.18 -15.96 16 10 H 0.05 1.24 6.99 -52.49 -0.37 0.87 16 11 C 0.03 0.80 4.31 -17.82 -0.08 0.72 16 12 N -0.91 -25.93 12.78 55.43 0.71 -25.22 16 13 Si 1.05 24.38 29.86 -169.99 -5.08 19.30 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.12 -2.38 4.84 -90.62 -0.44 -2.81 16 18 C -0.19 -3.51 10.18 -26.73 -0.27 -3.78 16 19 C -0.20 -3.39 7.82 -26.73 -0.21 -3.60 16 20 H 0.08 1.87 5.09 -51.93 -0.26 1.61 16 21 H 0.05 1.21 7.19 -51.93 -0.37 0.84 16 22 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 23 H 0.06 1.13 6.52 -51.93 -0.34 0.79 16 24 H 0.06 0.96 5.54 -51.93 -0.29 0.68 16 25 H 0.04 0.59 8.02 -51.93 -0.42 0.18 16 26 H 0.05 0.85 7.29 -51.93 -0.38 0.47 16 27 H 0.32 6.35 9.08 -39.29 -0.36 6.00 16 28 H 0.32 6.42 7.03 -39.29 -0.28 6.15 16 29 H 0.27 7.84 6.26 -40.82 -0.26 7.58 16 30 H 0.10 2.01 7.84 -51.93 -0.41 1.60 16 31 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.65 5.59 -51.93 -0.29 1.36 16 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -26.59 254.08 -6.85 -33.43 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -5.19 Total: 14.40 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -1.06 Total: -28.27 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.66 Total: -42.69 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.30 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.59 -6.85 -33.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.151 kcal (2) G-P(sol) polarization free energy of solvation -26.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds