Wall clock time and date at job start Mon Mar 30 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 C 1.53002 * 109.47283 * 120.00008 * 2 1 3 5 5 H 1.09003 * 109.46637 * 302.57068 * 4 2 1 6 6 C 1.52997 * 109.46992 * 62.56861 * 4 2 1 7 7 H 1.08998 * 109.46897 * 173.01472 * 6 4 2 8 8 N 1.46900 * 109.46828 * 53.01492 * 6 4 2 9 9 C 1.50699 * 109.47344 * 293.01674 * 6 4 2 10 10 H 1.07999 * 120.00241 * 115.45011 * 9 6 4 11 11 C 1.37880 * 119.99654 * 295.44750 * 9 6 4 12 12 N 1.31514 * 120.00160 * 352.45457 * 11 9 6 13 13 Si 1.86803 * 119.99740 * 172.44987 * 11 9 6 14 14 H 1.48501 * 109.47048 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.47075 * 300.00010 * 13 11 9 16 16 H 1.48502 * 109.47080 * 60.00248 * 13 11 9 17 17 C 1.53000 * 109.47266 * 182.57375 * 4 2 1 18 18 C 1.52994 * 117.50106 * 135.92608 * 17 4 2 19 19 C 1.52997 * 117.49973 * 67.30109 * 17 4 2 20 20 H 1.08998 * 109.47291 * 168.37345 * 1 2 3 21 21 H 1.09004 * 109.46954 * 288.37272 * 1 2 3 22 22 H 1.09001 * 109.47382 * 48.36662 * 1 2 3 23 23 H 1.08994 * 109.47104 * 240.00156 * 2 1 3 24 24 H 1.08999 * 109.46899 * 189.29834 * 3 2 1 25 25 H 1.09000 * 109.46923 * 309.29310 * 3 2 1 26 26 H 1.08992 * 109.47137 * 69.29291 * 3 2 1 27 27 H 1.00908 * 110.99928 * 173.16091 * 8 6 4 28 28 H 1.00897 * 111.00427 * 297.11095 * 8 6 4 29 29 H 0.97001 * 120.00267 * 355.20453 * 12 11 9 30 30 H 1.08999 * 115.54784 * 281.63477 * 17 4 2 31 31 H 1.09000 * 117.49787 * 0.02562 * 18 17 4 32 32 H 1.08996 * 117.50007 * 145.01675 * 18 17 4 33 33 H 1.09000 * 117.50108 * 214.98150 * 19 17 4 34 34 H 1.08999 * 117.50141 * 0.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6395 -0.2347 2.1386 6 6 1.5835 -2.1812 1.2173 7 1 2.0479 -2.7251 2.0398 8 7 1.9806 -2.7905 -0.0590 9 6 0.0843 -2.2419 1.3579 10 1 -0.5193 -2.6212 0.5466 11 6 -0.5168 -1.8133 2.5225 12 7 0.2202 -1.4918 3.5631 13 14 -2.3780 -1.6892 2.6219 14 1 -2.7706 -1.2069 3.9704 15 1 -2.8661 -0.7351 1.5940 16 1 -2.9769 -3.0265 2.3802 17 6 3.5686 -0.6654 1.2820 18 6 4.2348 -0.3301 2.6179 19 6 4.2213 0.7028 1.4892 20 1 -0.3634 -1.0065 -0.2071 21 1 -0.3633 0.3239 0.9753 22 1 -0.3634 0.6827 -0.7681 23 1 1.8932 -0.5138 -0.8899 24 1 3.1172 1.4470 -0.1660 25 1 1.5475 2.0020 -0.7953 26 1 1.8185 1.9062 0.9612 27 1 1.7906 -3.7816 -0.0611 28 1 1.5258 -2.3335 -0.8350 29 1 1.1811 -1.6219 3.5358 30 1 4.0790 -1.3726 0.6283 31 1 3.5841 -0.1497 3.4735 32 1 5.1836 -0.8169 2.8433 33 1 5.1612 0.8956 0.9721 34 1 3.5617 1.5631 1.6026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:12 Heat of formation + Delta-G solvation = -4.346083 kcal Electronic energy + Delta-G solvation = -13727.239606 eV Core-core repulsion = 11659.701750 eV Total energy + Delta-G solvation = -2067.537856 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.14871 -36.72205 -34.52417 -33.39109 -28.77408 -28.19193 -26.61948 -23.21635 -22.90478 -21.69432 -20.10655 -18.90839 -17.03916 -16.14943 -15.74458 -15.66002 -15.41355 -14.54192 -14.12487 -13.87773 -13.64802 -13.11594 -12.79343 -12.53013 -12.39961 -12.21223 -12.03172 -11.93151 -11.62354 -11.44456 -11.22915 -11.08151 -10.68296 -10.48800 -10.12723 -9.22944 -8.39008 -6.12806 1.50969 1.55834 1.73238 2.58592 3.05683 3.28143 3.93858 4.12073 4.17735 4.25282 4.36061 4.45944 4.48653 4.78243 4.83201 4.94987 5.00998 5.06808 5.10951 5.17001 5.25553 5.32725 5.38564 5.48452 5.58811 5.62717 5.87054 5.93600 6.06586 6.18276 6.67326 6.69930 6.94622 7.57944 8.88244 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.014092 C = 0.013391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.145749 B = 1986.526289 C = 2090.396449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.032 4.032 5 H 0.037 0.963 6 C 0.211 3.789 7 H -0.014 1.014 8 N -0.835 5.835 9 C -0.608 4.608 10 H 0.046 0.954 11 C -0.014 4.014 12 N -0.935 5.935 13 Si 1.084 2.916 14 H -0.292 1.292 15 H -0.269 1.269 16 H -0.277 1.277 17 C -0.138 4.138 18 C -0.198 4.198 19 C -0.171 4.171 20 H 0.067 0.933 21 H 0.021 0.979 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.327 0.673 28 H 0.333 0.667 29 H 0.261 0.739 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 3.876 -6.707 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.052 4.052 5 H 0.055 0.945 6 C 0.100 3.900 7 H 0.004 0.996 8 N -0.362 5.362 9 C -0.647 4.647 10 H 0.064 0.936 11 C -0.214 4.214 12 N -0.572 5.572 13 Si 0.908 3.092 14 H -0.218 1.218 15 H -0.194 1.194 16 H -0.203 1.203 17 C -0.156 4.156 18 C -0.236 4.236 19 C -0.207 4.207 20 H 0.086 0.914 21 H 0.040 0.960 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.230 4.583 -5.534 7.878 hybrid contribution 0.077 -0.968 -0.473 1.080 sum 3.307 3.615 -6.007 7.751 Atomic orbital electron populations 1.22036 0.96081 1.01833 0.98793 1.20804 0.95118 0.95530 0.97435 1.22160 1.01906 0.95777 1.00279 1.20656 0.90844 0.96743 0.96928 0.94511 1.18877 0.91986 0.91445 0.87655 0.99562 1.59177 1.65216 1.06892 1.04929 1.22779 0.93957 1.45691 1.02298 0.93595 1.26550 1.08915 0.93631 0.92276 1.70862 1.07751 1.46795 1.31831 0.83378 0.72213 0.77410 0.76154 1.21821 1.19419 1.20273 1.22320 0.95526 0.98724 0.99064 1.22957 1.02265 1.05620 0.92716 1.23238 1.02661 0.93135 1.01705 0.91378 0.95966 0.94214 0.91488 0.90707 0.92508 0.94623 0.86291 0.85498 0.92876 0.88180 0.91500 0.88326 0.87211 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 7.75 71.98 0.56 -4.80 16 2 C -0.07 -2.69 2.07 -10.79 -0.02 -2.71 16 3 C -0.14 -4.68 7.50 71.98 0.54 -4.14 16 4 C -0.03 -1.40 1.33 -10.79 -0.01 -1.42 16 5 H 0.04 1.90 6.11 -2.39 -0.01 1.88 16 6 C 0.21 10.12 2.11 44.17 0.09 10.21 16 7 H -0.01 -0.75 7.48 -2.39 -0.02 -0.77 16 8 N -0.84 -33.58 8.55 -171.81 -1.47 -35.05 16 9 C -0.61 -31.41 5.26 25.60 0.13 -31.27 16 10 H 0.05 2.36 6.99 -2.91 -0.02 2.34 16 11 C -0.01 -0.74 4.31 84.66 0.36 -0.37 16 12 N -0.93 -55.24 12.78 21.45 0.27 -54.97 16 13 Si 1.08 49.32 29.86 68.60 2.05 51.37 16 14 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 C -0.14 -5.25 4.84 -10.80 -0.05 -5.30 16 18 C -0.20 -7.15 10.18 30.59 0.31 -6.84 16 19 C -0.17 -5.37 7.82 30.59 0.24 -5.13 16 20 H 0.07 2.97 5.09 -2.39 -0.01 2.96 16 21 H 0.02 1.01 7.19 -2.38 -0.02 0.99 16 22 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 23 H 0.07 2.45 6.52 -2.39 -0.02 2.44 16 24 H 0.07 2.18 5.54 -2.39 -0.01 2.16 16 25 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 26 H 0.03 1.22 7.29 -2.39 -0.02 1.21 16 27 H 0.33 12.65 9.08 -89.69 -0.81 11.83 16 28 H 0.33 12.62 7.03 -89.70 -0.63 11.99 16 29 H 0.26 15.70 6.26 -92.71 -0.58 15.12 16 30 H 0.10 3.83 7.84 -2.39 -0.02 3.81 16 31 H 0.07 2.71 8.10 -2.39 -0.02 2.70 16 32 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.10 3.07 5.59 -2.39 -0.01 3.05 16 Total: -1.00 -57.56 254.08 2.84 -54.72 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -0.16 Total: 35.71 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 2.15 Total: -51.78 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -1.19 Total: -90.02 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.05 Total: 51.37 kcal Total: -57.56 2.84 -54.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.373 kcal (2) G-P(sol) polarization free energy of solvation -57.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds