Wall clock time and date at job start Mon Mar 30 2020 20:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47177 * 2 1 4 4 C 1.53003 * 109.46915 * 120.00233 * 2 1 3 5 5 H 1.08999 * 109.46970 * 294.97917 * 4 2 1 6 6 C 1.52995 * 109.47491 * 174.97812 * 4 2 1 7 7 H 1.09002 * 109.46927 * 54.26791 * 6 4 2 8 8 N 1.46895 * 109.47464 * 174.26988 * 6 4 2 9 9 C 1.50701 * 109.46761 * 294.27134 * 6 4 2 10 10 H 1.08002 * 120.00503 * 354.81823 * 9 6 4 11 11 C 1.37884 * 120.00026 * 174.81282 * 9 6 4 12 12 N 1.31520 * 119.99677 * 0.02562 * 11 9 6 13 13 Si 1.86792 * 120.00019 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47649 * 60.00105 * 13 11 9 15 15 H 1.48507 * 109.47069 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47024 * 299.99741 * 13 11 9 17 17 C 1.53006 * 109.47382 * 54.97217 * 4 2 1 18 18 C 1.52995 * 117.50177 * 253.49929 * 17 4 2 19 19 C 1.53000 * 117.49995 * 184.83717 * 17 4 2 20 20 H 1.08996 * 109.47214 * 299.99999 * 1 2 3 21 21 H 1.08998 * 109.46695 * 60.00186 * 1 2 3 22 22 H 1.09000 * 109.46876 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46857 * 239.99354 * 2 1 3 24 24 H 1.09001 * 109.47069 * 185.69146 * 3 2 1 25 25 H 1.08997 * 109.47047 * 305.69754 * 3 2 1 26 26 H 1.09007 * 109.47143 * 65.69823 * 3 2 1 27 27 H 1.00893 * 111.00087 * 307.65753 * 8 6 4 28 28 H 1.00901 * 110.99545 * 71.61169 * 8 6 4 29 29 H 0.97000 * 119.99647 * 179.97438 * 12 11 9 30 30 H 1.09001 * 115.54531 * 39.17160 * 17 4 2 31 31 H 1.08999 * 117.49812 * 0.02562 * 18 17 4 32 32 H 1.09001 * 117.49669 * 145.01862 * 18 17 4 33 33 H 1.08993 * 117.49776 * 214.98412 * 19 17 4 34 34 H 1.08997 * 117.49416 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7519 -0.1582 2.1369 6 6 3.5647 -0.8317 1.1878 7 1 3.9950 0.1588 1.0394 8 7 4.0657 -1.3996 2.4465 9 6 3.9577 -1.7270 0.0411 10 1 3.1971 -2.2393 -0.5294 11 6 5.2885 -1.8922 -0.2799 12 7 6.2148 -1.2688 0.4151 13 14 5.7755 -3.0014 -1.7017 14 1 5.1641 -2.4951 -2.9566 15 1 7.2542 -3.0095 -1.8392 16 1 5.2958 -4.3821 -1.4392 17 6 1.4294 -2.1228 1.3141 18 6 0.3335 -2.3686 2.3530 19 6 1.7280 -2.9668 2.5547 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1253 1.4441 -0.1019 25 1 1.5958 1.9849 -0.8346 26 1 1.7624 1.9260 0.9367 27 1 3.7113 -0.8878 3.2405 28 1 3.8375 -2.3799 2.5170 29 1 7.1510 -1.3853 0.1895 30 1 1.3443 -2.6430 0.3600 31 1 0.0472 -1.5318 2.9901 32 1 -0.4724 -3.0508 2.0826 33 1 1.8389 -4.0423 2.4170 34 1 2.3598 -2.5238 3.3246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260991924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:14 Heat of formation + Delta-G solvation = 10.433246 kcal Electronic energy + Delta-G solvation = -13462.130779 eV Core-core repulsion = 11395.233803 eV Total energy + Delta-G solvation = -2066.896976 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.45499 -34.52937 -33.28203 -31.12742 -27.18834 -26.60277 -24.96435 -21.84819 -20.98176 -20.19658 -18.84609 -16.20947 -15.02708 -14.60665 -14.28784 -13.91597 -13.36095 -13.02630 -12.57844 -12.03140 -11.79771 -11.66405 -11.30799 -11.01353 -10.92323 -10.78211 -10.57628 -10.40668 -10.18537 -9.93147 -9.72510 -9.20439 -9.10561 -8.67967 -8.31125 -6.72692 -5.79420 -3.89898 3.38380 3.43714 3.45713 4.48934 4.54779 5.26899 5.43138 5.52305 5.59355 5.71028 5.75331 5.86665 6.05487 6.16778 6.22320 6.31092 6.38188 6.42279 6.48348 6.54279 6.61920 6.69950 6.82657 6.95665 6.98239 7.14753 7.28572 7.77284 8.00941 8.35927 8.82781 9.18983 9.32645 9.77523 11.26838 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.013652 C = 0.012145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.193573 B = 2050.447964 C = 2304.954691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.079 4.079 5 H 0.039 0.961 6 C 0.228 3.772 7 H 0.042 0.958 8 N -0.826 5.826 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.079 3.921 12 N -0.855 5.855 13 Si 0.876 3.124 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.280 1.280 17 C -0.102 4.102 18 C -0.203 4.203 19 C -0.186 4.186 20 H 0.042 0.958 21 H 0.040 0.960 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.289 0.711 28 H 0.326 0.674 29 H 0.254 0.746 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 0.625 1.325 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.199 4.199 4 C -0.100 4.100 5 H 0.057 0.943 6 C 0.119 3.881 7 H 0.060 0.940 8 N -0.355 5.355 9 C -0.560 4.560 10 H 0.071 0.929 11 C -0.127 4.127 12 N -0.491 5.491 13 Si 0.705 3.295 14 H -0.205 1.205 15 H -0.216 1.216 16 H -0.206 1.206 17 C -0.120 4.120 18 C -0.240 4.240 19 C -0.224 4.224 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.421 0.852 1.082 8.533 hybrid contribution -0.705 -0.940 -0.554 1.299 sum -9.126 -0.088 0.528 9.141 Atomic orbital electron populations 1.21889 0.97202 1.00974 0.99988 1.20967 0.93277 0.95778 0.99790 1.21805 1.02277 0.96085 0.99713 1.21725 1.01166 0.91450 0.95638 0.94281 1.19078 0.84221 0.96662 0.88187 0.93980 1.59377 1.67172 1.05913 1.03051 1.20917 0.91500 1.29406 1.14188 0.92926 1.24980 0.97030 0.95255 0.95388 1.70081 0.99842 1.41101 1.38104 0.86950 0.77280 0.81697 0.83614 1.20517 1.21565 1.20557 1.22101 0.98879 0.97784 0.93233 1.23016 0.92304 1.03259 1.05438 1.23042 0.97815 0.99234 1.02281 0.93890 0.94067 0.92936 0.90162 0.91499 0.94093 0.94075 0.90031 0.85863 0.93606 0.88448 0.89920 0.90169 0.89660 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.84 37.16 0.33 -1.88 16 2 C -0.08 -1.45 2.40 -90.62 -0.22 -1.67 16 3 C -0.14 -2.49 8.81 37.16 0.33 -2.16 16 4 C -0.08 -1.54 1.50 -90.62 -0.14 -1.68 16 5 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 6 C 0.23 5.44 2.27 -68.87 -0.16 5.28 16 7 H 0.04 1.14 6.44 -51.93 -0.33 0.81 16 8 N -0.83 -19.31 8.17 -5.66 -0.05 -19.36 16 9 C -0.52 -13.74 7.13 -34.44 -0.25 -13.99 16 10 H 0.05 1.37 6.21 -52.49 -0.33 1.05 16 11 C 0.08 2.19 5.41 -17.81 -0.10 2.09 16 12 N -0.86 -25.09 13.00 55.43 0.72 -24.37 16 13 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C -0.10 -1.86 2.65 -90.62 -0.24 -2.10 16 18 C -0.20 -3.15 9.93 -26.70 -0.27 -3.41 16 19 C -0.19 -3.19 8.44 -26.69 -0.23 -3.41 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.80 6.89 -51.93 -0.36 0.44 16 23 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 24 H 0.07 1.33 6.72 -51.93 -0.35 0.98 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.29 6.06 8.56 -39.30 -0.34 5.72 16 28 H 0.33 7.43 5.70 -39.29 -0.22 7.21 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.10 1.90 7.41 -51.93 -0.38 1.51 16 31 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.65 5.83 -51.93 -0.30 1.35 16 LS Contribution 263.33 15.07 3.97 3.97 Total: -1.00 -28.10 263.33 -6.79 -34.88 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.48 Total: 11.47 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -0.93 Total: -22.92 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.67 Total: -43.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.10 -6.79 -34.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.316 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds