Wall clock time and date at job start Mon Mar 30 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47631 * 110.99802 * 2 1 4 4 C 1.50817 * 108.04929 * 150.34259 * 3 2 1 5 5 C 1.53822 * 111.62524 * 95.05286 * 4 3 2 6 6 C 1.54175 * 111.96733 * 319.03983 * 5 4 3 7 7 C 1.52995 * 108.77104 * 79.24152 * 6 5 4 8 8 C 1.50696 * 108.85224 * 197.67955 * 6 5 4 9 9 H 1.08001 * 120.00003 * 5.82846 * 8 6 5 10 10 C 1.37879 * 120.00245 * 185.82628 * 8 6 5 11 11 N 1.31512 * 119.99469 * 351.66800 * 10 8 6 12 12 Si 1.86801 * 120.00337 * 171.66180 * 10 8 6 13 13 H 1.48506 * 109.46923 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47202 * 240.00350 * 12 10 8 15 15 H 1.48501 * 109.46907 * 119.99871 * 12 10 8 16 16 C 1.50750 * 112.61358 * 318.48910 * 6 5 4 17 17 C 1.39776 * 111.00315 * 231.10301 * 2 1 3 18 18 H 1.09002 * 109.47022 * 188.89058 * 1 2 3 19 19 H 1.08994 * 109.47605 * 308.89633 * 1 2 3 20 20 H 1.09007 * 109.46832 * 68.89847 * 1 2 3 21 21 H 1.09005 * 109.74393 * 269.97954 * 3 2 1 22 22 H 1.08994 * 109.75021 * 30.65301 * 3 2 1 23 23 H 1.09003 * 109.04780 * 215.60307 * 4 3 2 24 24 H 1.08996 * 109.05005 * 334.56860 * 4 3 2 25 25 H 1.08999 * 108.98178 * 198.39604 * 5 4 3 26 26 H 1.08999 * 108.98340 * 79.67888 * 5 4 3 27 27 H 1.09004 * 109.47115 * 159.96023 * 7 6 5 28 28 H 1.09003 * 109.47443 * 279.95540 * 7 6 5 29 29 H 1.08999 * 109.47539 * 39.95549 * 7 6 5 30 30 H 0.97001 * 120.00498 * 4.45701 * 11 10 8 31 31 H 1.09002 * 109.54467 * 212.88079 * 16 6 5 32 32 H 1.09003 * 109.54276 * 333.15261 * 16 6 5 33 33 H 1.08994 * 109.02018 * 68.54366 * 17 2 1 34 34 H 1.08998 * 108.95792 * 309.68368 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3783 0.0000 4 6 3.3288 1.3680 0.7095 5 6 4.4983 1.2355 -0.2809 6 6 4.1920 0.2234 -1.4029 7 6 3.2985 0.8990 -2.4449 8 6 5.4862 -0.1807 -2.0606 9 1 6.4273 0.1632 -1.6576 10 6 5.4690 -0.9897 -3.1770 11 7 4.3424 -1.5418 -3.5716 12 14 7.0455 -1.3014 -4.1292 13 1 8.1660 -0.5707 -3.4842 14 1 6.8825 -0.8250 -5.5262 15 1 7.3416 -2.7566 -4.1337 16 6 3.4971 -1.0137 -0.8937 17 6 1.9700 -0.8194 -1.0156 18 1 -0.3633 -1.0153 0.1588 19 1 -0.3634 0.6452 0.7997 20 1 -0.3633 0.3700 -0.9588 21 1 2.1303 1.7219 -1.0260 22 1 1.3061 2.0384 0.5230 23 1 3.4405 2.2964 1.2697 24 1 3.3553 0.5284 1.4040 25 1 5.3857 0.9073 0.2603 26 1 4.6972 2.2099 -0.7270 27 1 3.3612 0.3530 -3.3862 28 1 2.2667 0.8996 -2.0933 29 1 3.6308 1.9258 -2.5977 30 1 3.5125 -1.3290 -3.1166 31 1 3.8038 -1.8747 -1.4877 32 1 3.7618 -1.1767 0.1510 33 1 1.7454 -0.3660 -1.9810 34 1 1.4824 -1.7925 -0.9583 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116743.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:21 Heat of formation + Delta-G solvation = 34.770009 kcal Electronic energy + Delta-G solvation = -13905.960322 eV Core-core repulsion = 11840.118667 eV Total energy + Delta-G solvation = -2065.841655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64237 -35.25792 -32.63255 -30.44963 -27.76108 -26.80055 -24.74020 -23.90820 -22.13191 -19.52864 -18.02419 -16.72344 -15.39267 -14.90602 -14.57480 -13.73887 -13.58851 -13.13954 -12.65259 -12.41636 -12.00344 -11.71419 -11.30617 -10.95558 -10.74429 -10.37690 -10.28615 -10.18580 -10.09851 -10.02536 -9.76336 -9.33477 -9.05549 -8.34291 -8.01274 -7.37069 -6.15903 -3.97738 3.46881 3.49530 3.63524 4.53813 4.57713 5.42396 5.49382 5.53403 5.67509 5.82235 5.93021 6.07463 6.08504 6.14506 6.19494 6.39699 6.49113 6.49526 6.63068 6.75303 6.81233 6.95524 7.08320 7.12679 7.25861 7.40172 7.67872 7.74697 7.94611 8.06063 8.39694 8.53337 8.98156 9.72892 11.11716 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055320 B = 0.012335 C = 0.011031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.025780 B = 2269.386347 C = 2537.700084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.554 5.554 3 C 0.041 3.959 4 C -0.114 4.114 5 C -0.095 4.095 6 C 0.054 3.946 7 C -0.172 4.172 8 C -0.584 4.584 9 H 0.047 0.953 10 C 0.019 3.981 11 N -0.922 5.922 12 Si 1.067 2.933 13 H -0.291 1.291 14 H -0.289 1.289 15 H -0.289 1.289 16 C -0.104 4.104 17 C 0.054 3.946 18 H 0.060 0.940 19 H 0.059 0.941 20 H 0.017 0.983 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.283 0.717 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 3.835 5.110 8.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.279 5.279 3 C -0.085 4.085 4 C -0.152 4.152 5 C -0.133 4.133 6 C 0.054 3.946 7 C -0.229 4.229 8 C -0.622 4.622 9 H 0.065 0.935 10 C -0.184 4.184 11 N -0.562 5.562 12 Si 0.896 3.104 13 H -0.217 1.217 14 H -0.215 1.215 15 H -0.216 1.216 16 C -0.143 4.143 17 C -0.075 4.075 18 H 0.079 0.921 19 H 0.078 0.922 20 H 0.036 0.964 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.191 2.792 4.220 6.570 hybrid contribution -0.857 1.212 0.560 1.586 sum -5.048 4.004 4.781 8.023 Atomic orbital electron populations 1.22318 0.88507 1.01488 0.99395 1.58984 1.05936 1.12496 1.50493 1.22289 0.96117 0.88254 1.01808 1.21402 0.94707 1.00416 0.98689 1.21959 0.96030 0.98898 0.96421 1.18029 0.94741 0.90764 0.91108 1.22935 0.98056 0.99197 1.02693 1.22081 0.92061 1.34289 1.13794 0.93504 1.25621 1.03477 0.93363 0.95913 1.70738 1.00136 1.40253 1.45040 0.83584 0.74676 0.76201 0.75918 1.21719 1.21549 1.21551 1.21723 0.90642 1.01731 1.00158 1.21323 0.98276 0.95224 0.92669 0.92104 0.92236 0.96415 0.90907 0.92729 0.93651 0.91576 0.93442 0.94027 0.91438 0.93228 0.95520 0.90248 0.89991 0.93637 0.94305 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.46 60.07 0.57 1.03 16 2 N -0.55 -10.08 4.19 -248.33 -1.04 -11.12 16 3 C 0.04 0.73 5.30 -4.52 -0.02 0.70 16 4 C -0.11 -2.09 5.41 -27.40 -0.15 -2.24 16 5 C -0.10 -2.05 4.85 -25.69 -0.12 -2.17 16 6 C 0.05 1.31 0.50 -156.18 -0.08 1.23 16 7 C -0.17 -4.06 5.99 37.16 0.22 -3.84 16 8 C -0.58 -16.15 7.83 -34.44 -0.27 -16.42 16 9 H 0.05 1.32 7.68 -52.49 -0.40 0.92 16 10 C 0.02 0.54 4.74 -17.82 -0.08 0.46 16 11 N -0.92 -26.83 11.86 55.43 0.66 -26.17 16 12 Si 1.07 25.29 29.91 -169.99 -5.08 20.20 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.10 -2.46 4.19 -27.11 -0.11 -2.57 16 17 C 0.05 1.10 4.54 -6.75 -0.03 1.07 16 18 H 0.06 0.84 8.04 -51.93 -0.42 0.43 16 19 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 20 H 0.02 0.26 8.14 -51.92 -0.42 -0.17 16 21 H 0.07 1.38 4.00 -51.93 -0.21 1.18 16 22 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.26 7.26 -51.93 -0.38 0.88 16 25 H 0.05 1.04 7.91 -51.93 -0.41 0.63 16 26 H 0.04 0.87 7.66 -51.93 -0.40 0.48 16 27 H 0.07 1.78 5.28 -51.93 -0.27 1.51 16 28 H 0.05 1.07 2.68 -51.93 -0.14 0.93 16 29 H 0.03 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.28 7.96 3.82 -40.82 -0.16 7.81 16 31 H 0.08 2.18 5.58 -51.93 -0.29 1.89 16 32 H 0.04 1.06 7.10 -51.93 -0.37 0.69 16 33 H 0.04 0.85 4.84 -51.93 -0.25 0.60 16 34 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 239.25 15.07 3.61 3.61 Total: -1.00 -28.64 239.25 -6.89 -35.53 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.95 Total: 0.69 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.08 Total: -22.74 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.38 Total: -37.29 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.64 -6.89 -35.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116743.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.303 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds